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Genomes encoding eukaryotic-like proteins

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PF01644 Chitin synthase

Copy number in non-pathogens:
Mean=0.00 Stddev=0.04

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Pectobacterium atrosepticum SCRI1043 s 26 1
Teredinibacter turnerae T7902 s 26 1
Teredinibacter turnerae T8415 s 26 1
Pectobacterium atrosepticum CFBP 6276 s 26 1
Dickeya paradisiaca NCPPB 2511 s 53 2
Dickeya zeae CSL RW192 s 26 1
Dickeya sp. NCPPB 3274 s 26 1
Dickeya zeae NCPPB 3531 s 26 1
Dickeya zeae ZJU1202 s 26 1
Pectobacterium parmentieri WPP163 s 26 1
Agrobacterium vitis S4 s 26 1
Teredinibacter turnerae T7901 s 26 1
Pectobacterium parmentieri CFIA1002 s 26 1
Teredinibacter sp. 991H.S.0a.06 s 26 1
Pectobacterium atrosepticum s 26 1
Pectobacterium atrosepticum s 26 1
Pectobacterium atrosepticum s 26 1
Pectobacterium atrosepticum s 26 1
Pectobacterium carotovorum subsp. brasiliense s 26 1
Pectobacterium atrosepticum ICMP 1526 s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Agrobacterium vitis s 26 1
Pantoea cypripedii s 26 1
Agrobacterium vitis s 26 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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