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Genomes encoding eukaryotic-like proteins

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PF01788 PsbJ

Copy number in non-pathogens:
Mean=0.03 Stddev=0.16

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Microcystis aeruginosa NIES-843 s 6 1
Bifidobacterium angulatum DSM 20098 = JCM 7096 s 6 1
Staphylococcus aureus subsp. aureus s 6 1
Candidatus Synechococcus spongiarum s 6 1
Bifidobacterium angulatum DSM 20098 = JCM 7096 s 6 1
Rivularia sp. PCC 7116 s 6 1
Geminocystis herdmanii PCC 6308 s 6 1
Geitlerinema sp. PCC 7105 s 6 1
Leptolyngbya boryana PCC 6306 s 6 1
Calothrix sp. PCC 7103 s 6 1
Calothrix sp. PCC 6303 s 6 1
Pleurocapsa sp. PCC 7319 s 6 1
Synechococcus sp. PCC 7335 s 6 1
Neisseria sp. oral taxon 020 str. F0370 s 6 1
Bifidobacterium angulatum DSM 20098 = JCM 7096 s 6 1
Bifidobacterium merycicum DSM 6492 s 6 1
Nostoc punctiforme PCC 73102 s 6 1
'Nostoc azollae' 0708 s 6 1
Acaryochloris marina MBIC11017 s 6 1
Candidatus Synechococcus spongiarum SH4 s 6 1
Bifidobacterium angulatum s 6 1
Bifidobacterium scardovii s 6 1
Bifidobacterium merycicum DSM 6492 s 6 1
Myxosarcina sp. GI1 s 6 1
Bifidobacterium scardovii s 6 1
Bifidobacterium angulatum s 6 1
Nostoc sp. KVJ20 s 6 1
Salmonella enterica subsp. enterica serovar Enteritidis s 6 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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