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Genomes encoding eukaryotic-like proteins

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PF01839 FG-GAP repeat

Copy number in non-pathogens:
Mean=0.29 Stddev=1.20

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptomyces scabiei s 8 11
Streptomyces sp. S4 s 4 6
Synechococcus sp. PCC 7335 s 8 11
Streptomyces ipomoeae 91-03 s 8 10
Dyadobacter beijingensis DSM 21582 s 6 8
Dyadobacter fermentans DSM 18053 s 4 6
Nostoc punctiforme PCC 73102 s 4 6
Candidatus Midichloria mitochondrii IricVA s 7 9
Streptomyces wadayamensis s 4 6
Streptomyces europaeiscabiei s 4 6
Streptomyces scabiei s 9 12
Streptomyces scabiei s 10 13
Myxosarcina sp. GI1 s 13 16
Streptomyces scabiei s 9 12
Streptomyces europaeiscabiei s 8 11
Streptomyces atriruber s 8 11
Streptomyces silaceus s 6 8
Streptomyces scabiei s 9 12
Streptomyces scabiei s 9 12
Streptomyces scabiei s 9 12
Streptomyces scabiei s 9 12
Streptomyces scabiei s 9 12
Streptomyces scabiei s 9 12
Streptomyces europaeiscabiei s 11 14
Streptomyces europaeiscabiei s 11 14
Streptomyces sp. 96-12 s 8 11
Streptomyces scabiei s 8 11
Leptospira alstonii s 5 7
Streptomyces silaceus s 8 10
Streptomyces scabiei s 5 7
Streptomyces scabiei s 4 6
Streptomyces scabiei s 7 9
Streptomyces scabiei s 8 10

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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