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Genomes encoding eukaryotic-like proteins

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PF01847 VHL beta domain

Copy number in non-pathogens:
Mean=0.01 Stddev=0.12

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Aurantimonas coralicida s 8 1
Verrucomicrobium sp. BvORR034 s 8 1
Verrucomicrobium sp. BvORR106 s 8 1
Chthoniobacter flavus Ellin428 s 16 2
Micromonospora sp. L5 s 8 1
Frankia symbiont of Datisca glomerata s 8 1
Rhodopirellula baltica SWK14 s 16 2
Labrenzia alexandrii DFL-11 s 8 1
Pleomorphomonas oryzae DSM 16300 s 8 1
Actinokineospora inagensis DSM 44258 s 8 1
Pannonibacter phragmitetus DSM 14782 s 8 1
Frankia sp. EUN1f s 8 1
Nitrospirillum amazonense Y2 s 8 1
Labrenzia sp. DG1229 s 8 1
Salinispora pacifica CNT084 s 8 1
Salinispora pacifica CNT001 s 8 1
Salinispora arenicola CNX482 s 8 1
Salinispora arenicola CNR921 s 8 1
Salinispora pacifica CNS103 s 8 1
Salinispora arenicola CNX508 s 8 1
Salinispora arenicola CNT005 s 8 1
Salinispora arenicola CNH905 s 8 1
Salinispora arenicola CNT800 s 8 1
Ruegeria sp. TM1040 s 8 1
Martelella endophytica s 8 1
Pannonibacter phragmitetus s 8 1
Pannonibacter phragmitetus s 8 1
Nostoc sp. KVJ20 s 8 1
Bradyrhizobium icense s 8 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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