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Genomes encoding eukaryotic-like proteins

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PF01946 Thi4 family

Copy number in non-pathogens:
Mean=0.08 Stddev=0.28

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Acinetobacter sp. ADP1 s 6 2
Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 s 6 2
Acinetobacter radioresistens NIPH 2130 s 6 2
Rhizobium giardinii bv. giardinii H152 s 6 2
Acinetobacter sp. 1461402 s 6 2
Acinetobacter sp. 230853 s 6 2
Acinetobacter sp. 869535 s 6 2
Acinetobacter sp. 983759 s 6 2
Acinetobacter sp. 1239920 s 6 2
Afipia sp. P52-10 s 6 2
Rhizobium sp. CIAT894 s 6 2
Acinetobacter radioresistens TG02010 s 6 2
Clostridium ljungdahlii DSM 13528 s 10 3
Acinetobacter baumannii 21072 s 6 2
Agrobacterium rhizogenes s 6 2
Agrobacterium rhizogenes s 6 2
Rhizobium tropici s 6 2
Agrobacterium rhizogenes s 13 4
Rhizobium tropici s 6 2
Acinetobacter baumannii s 6 2
Clostridium ljungdahlii DSM 13528 s 10 3
Rhizobium sp. N324 s 6 2
Rhizobium sp. N541 s 6 2
Rhizobium sp. N941 s 6 2
Rhizobium gallicum s 6 2
Acinetobacter baumannii s 6 2
Acinetobacter baumannii s 6 2
Acinetobacter baumannii s 6 2
Acinetobacter pittii s 6 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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