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Genomes encoding eukaryotic-like proteins

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PF02002 TFIIE alpha subunit

Copy number in non-pathogens:
Mean=0.00 Stddev=0.07

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Lactobacillus iners SPIN 1401G s 14 1
Lactobacillus iners SPIN 2503V10-D s 14 1
Lactobacillus iners LactinV 01V1-a s 14 1
Lactobacillus iners LactinV 09V1-c s 14 1
Lactobacillus iners LEAF 2053A-b s 14 1
Lactobacillus iners LactinV 11V1-d s 14 1
Lactobacillus iners LEAF 2052A-d s 14 1
Lactobacillus iners LEAF 2062A-h1 s 14 1
Lactobacillus iners LEAF 3008A-a s 14 1
Lactobacillus iners UPII 143-D s 14 1
Lactobacillus iners UPII 60-B s 14 1
Lactobacillus iners DSM 13335 s 14 1
Lactobacillus iners ATCC 55195 s 14 1
Lactobacillus iners DSM 13335 s 14 1
Lactobacillus sp. 7_1_47FAA s 14 1
Lactobacillus iners AB-1 s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Sphingobacterium sp. ML3W s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1
Lysinibacillus sphaericus s 14 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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