Metamenu

Genomes encoding eukaryotic-like proteins

PF02055 Glycosyl hydrolase family 30 TIM-barrel domain

Copy number in non-pathogens:
Mean=0.24 Stddev=0.68

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paenibacillus pinihumi DSM 23905 = JCM 16419 s 8 6
Gorillibacterium massiliense s 4 3
Bacteroides thetaiotaomicron s 4 3
Paenibacillus riograndensis SBR5 s 5 4
Bacteroides thetaiotaomicron s 4 3
Bacteroides thetaiotaomicron s 4 3
Bacteroides thetaiotaomicron s 5 4
Paenibacillus phocaensis s 5 4
Bacteroides intestinalis DSM 17393 s 5 4
Paenibacillus sp. JDR-2 s 4 3
Chryseobacterium gleum ATCC 35910 s 4 3
Bacteroides ovatus SD CMC 3f s 4 3
Bacteroides cellulosilyticus DSM 14838 s 7 5
Kutzneria sp. 744 s 8 6
Paraprevotella xylaniphila YIT 11841 s 4 3
Bifidobacterium sp. 7101 s 4 3
Lactobacillus diolivorans DSM 14421 s 4 3
Flavobacterium sp. F52 s 7 5
Stigmatella aurantiaca DW4/3-1 s 4 3
Streptomyces turgidiscabies Car8 s 4 3
Clostridium sp. KLE 1755 s 5 4
Bacteroides cellulosilyticus WH2 s 7 5
Chryseobacterium gregarium DSM 19109 s 4 3
Paenibacillus pinihumi DSM 23905 = JCM 16419 s 7 5
Dysgonomonas capnocytophagoides DSM 22835 s 4 3
Cohnella thermotolerans DSM 17683 s 4 3
Flavobacterium denitrificans DSM 15936 s 5 4
Dysgonomonas mossii DSM 22836 s 4 3
Streptomyces sp. SA3_actF s 4 3
Bacteroides sp. 2_2_4 s 4 3
Parabacteroides sp. 20_3 s 4 3
Bacteroides sp. 3_1_23 s 4 3
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 4 3
Subdoligranulum sp. 4_3_54A2FAA s 4 3
Tannerella sp. 6_1_58FAA_CT1 s 4 3
Bacteroides oleiciplenus YIT 12058 s 10 7
Dysgonomonas mossii DSM 22836 s 4 3
Bacteroides cellulosilyticus CL02T12C19 s 7 5
Parabacteroides distasonis CL09T03C24 s 4 3
Paenibacillus riograndensis SBR5 s 4 3
[Clostridium] termitidis CT1112 s 4 3
Streptomyces sp. HGB0020 s 4 3
Paenibacillus polymyxa E681 s 4 3
Stigmatella aurantiaca DW4/3-1 s 4 3
Bifidobacterium asteroides PRL2011 s 4 3
Bifidobacterium coryneforme s 4 3
[Clostridium] cellobioparum DSM 1351 = ATCC 15832 s 4 3
Bacteroides thetaiotaomicron s 4 3
Paenibacillus odorifer s 5 4
Bacteroides thetaiotaomicron s 4 3
Bifidobacterium asteroides s 4 3
Bifidobacterium coryneforme s 4 3
Bifidobacterium asteroides s 4 3
Ruthenibacterium lactatiformans s 4 3
Bacteroides thetaiotaomicron s 4 3
Bacteroides ovatus s 5 4
Paenibacillus jilunlii s 5 4
Chryseobacterium indologenes s 4 3
Ruthenibacterium lactatiformans s 4 3
Bifidobacterium adolescentis s 4 3
Polaribacter reichenbachii s 5 4
Streptomyces sp. 96-12 s 4 3
Hymenobacter sp. PAMC 26628 s 5 4
Paenibacillus jilunlii s 5 4
Paenibacillus kribbensis s 4 3
Chryseobacterium contaminans s 4 3
Flavobacterium johnsoniae s 7 5
Chryseobacterium oranimense s 4 3
Flavobacterium johnsoniae s 5 4
Stigmatella aurantiaca s 4 3
Flavobacterium johnsoniae s 5 4
Chryseobacterium contaminans s 4 3
Eisenbergiella tayi s 4 3
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 4 3
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 4 3
Paenibacillus odorifer s 4 3
Paenibacillus odorifer s 4 3
Flavobacterium johnsoniae s 8 6
Paenibacillus odorifer s 5 4
Paenibacillus odorifer s 5 4
Paenibacillus polymyxa s 4 3
Polaribacter reichenbachii s 5 4
Streptomyces scabiei s 4 3
Streptomyces scabiei s 4 3

*p=pathogen;s=symbiont