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Genomes encoding eukaryotic-like proteins

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PF02265 S1/P1 Nuclease

Copy number in non-pathogens:
Mean=0.15 Stddev=0.39

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Alistipes timonensis JC136 s 4 2
Alistipes ihumii AP11 s 4 2
Alistipes senegalensis JC50 s 4 2
Alistipes obesi s 20 8
Mesorhizobium plurifarium s 4 2
Alistipes shahii WAL 8301 s 12 5
Alistipes sp. HGB5 s 12 5
Novosphingobium sp. AP12 s 4 2
Alistipes finegoldii DSM 17242 s 7 3
Leptospira interrogans str. UI 13372 s 4 2
Bradyrhizobium sp. Ai1a-2 s 4 2
Bradyrhizobium sp. ARR65 s 4 2
Bradyrhizobium sp. Ec3.3 s 7 3
Alistipes onderdonkii WAL 8169 = DSM 19147 s 4 2
Mesorhizobium loti CJ3sym s 4 2
Bradyrhizobium japonicum USDA 135 s 4 2
Bradyrhizobium sp. th.b2 s 4 2
Sphingomonas sp. PAMC 26605 s 4 2
Nitrospirillum amazonense Y2 s 4 2
Sphingobium indicum B90A s 4 2
Pedobacter borealis DSM 19626 s 4 2
Mesorhizobium sp. WSM1293 s 4 2
Myxosarcina sp. GI1 s 4 2
Endozoicomonas arenosclerae s 4 2
Sphingomonas panacis s 4 2
Hymenobacter sp. PAMC 26628 s 7 3
Alistipes timonensis JC136 s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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