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Genomes encoding eukaryotic-like proteins

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PF02494 HYR domain

Copy number in non-pathogens:
Mean=0.06 Stddev=0.44

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Capnocytophaga sputigena ATCC 33612 s 6 3
Capnocytophaga ochracea DSM 7271 s 4 2
Capnocytophaga ochracea F0287 s 4 2
Capnocytophaga ochracea str. Holt 25 s 4 2
Capnocytophaga sp. oral taxon 335 str. F0486 s 4 2
Capnocytophaga sp. oral taxon 412 str. F0487 s 4 2
Capnocytophaga cynodegmi DSM 19736 s 4 2
Stigmatella aurantiaca DW4/3-1 s 11 5
Capnocytophaga sp. oral taxon 326 str. F0382 s 6 3
Capnocytophaga sp. oral taxon 324 str. F0483 s 4 2
Capnocytophaga sp. oral taxon 332 str. F0381 s 4 2
Capnocytophaga sp. oral taxon 380 str. F0488 s 4 2
Tenacibaculum ovolyticum DSM 18103 s 4 2
Aquimarina agarilytica ZC1 s 6 3
Capnocytophaga sp. oral taxon 336 str. F0502 s 4 2
Capnocytophaga canimorsus Cc5 s 4 2
Stigmatella aurantiaca DW4/3-1 s 11 5
Capnocytophaga ochracea s 4 2
Ruegeria mobilis s 4 2
Polaribacter reichenbachii s 4 2
Capnocytophaga haemolytica s 4 2
Flavobacterium johnsoniae s 4 2
Stigmatella aurantiaca s 13 6
Capnocytophaga haemolytica s 4 2
Flavobacterium johnsoniae s 4 2
Polaribacter reichenbachii s 4 2
Lentzea kentuckyensis s 6 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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