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Genomes encoding eukaryotic-like proteins

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PF03068 Protein-arginine deiminase (PAD)

Copy number in non-pathogens:
Mean=0.02 Stddev=0.16

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptomyces scabiei s 5 1
Streptomyces acidiscabies s 5 1
Streptomyces acidiscabies s 5 1
Austwickia chelonae NBRC 105200 s 18 3
Streptomyces thermolilacinus SPC6 s 5 1
Geitlerinema sp. PCC 7105 s 12 2
Calothrix sp. PCC 7103 s 5 1
Vibrio parahaemolyticus s 5 1
Nocardia brasiliensis ATCC 700358 p 5 1
Lentzea albidocapillata s 5 1
Amycolatopsis jejuensis s 5 1
Streptomyces scabiei s 12 2
Streptomyces scabiei s 18 3
Streptomyces acidiscabies s 5 1
Vibrio parahaemolyticus s 5 1
Streptomyces scabiei s 12 2
Streptomyces europaeiscabiei s 5 1
Streptomyces scabiei s 12 2
Streptomyces scabiei s 12 2
Streptomyces scabiei s 12 2
Streptomyces scabiei s 12 2
Streptomyces scabiei s 12 2
Streptomyces scabiei s 12 2
Streptomyces europaeiscabiei s 5 1
Streptomyces europaeiscabiei s 5 1
Streptomyces sp. 96-12 s 5 1
Streptomyces scabiei s 12 2
Streptomyces acidiscabies s 5 1
Streptomyces acidiscabies s 5 1
Streptomyces acidiscabies s 5 1
Lentzea albidocapillata s 5 1
Lentzea kentuckyensis s 5 1
Streptomyces scabiei s 5 1
Streptomyces scabiei s 5 1
Streptomyces scabiei s 12 2
Streptomyces scabiei s 5 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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