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Genomes encoding eukaryotic-like proteins

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PF03253 Urea transporter

Copy number in non-pathogens:
Mean=0.12 Stddev=0.34

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides finegoldii DSM 17565 s 5 2
Escherichia coli HVH 185 (4-2876639) s 5 2
Escherichia coli HVH 225 (4-1273116) s 5 2
Escherichia coli KOEGE 58 (171a) s 5 2
Escherichia coli UMEA 3087-1 s 5 2
Escherichia coli UMEA 3113-1 s 5 2
Escherichia coli UMEA 3222-1 s 5 2
Escherichia coli J96 s 5 2
Escherichia coli s 5 2
Escherichia coli s 8 3
Escherichia coli s 5 2
Escherichia coli s 8 3
Escherichia coli s 5 2
Escherichia coli s 8 3
Colwellia psychrerythraea s 5 2
Sphingobacterium sp. ML3W s 5 2
Pseudomonas stutzeri s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas fluorescens s 5 2
Pseudomonas stutzeri s 5 2
Escherichia coli s 5 2
Escherichia coli s 5 2
Pseudomonas stutzeri s 5 2
Pseudomonas stutzeri s 5 2
Streptomyces sp. SAT1 s 5 2
Escherichia coli s 8 3
Pseudomonas stutzeri s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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