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Genomes encoding eukaryotic-like proteins

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PF03388 Legume-like lectin family

Copy number in non-pathogens:
Mean=0.01 Stddev=0.18

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Haloferula sp. BvORR071 s 5 1
Nocardia asiatica NBRC 100129 s 5 1
Nocardia araoensis NBRC 100135 s 5 1
Nocardia abscessus NBRC 100374 s 5 1
Nocardia exalbida NBRC 100660 s 5 1
Chryseobacterium indologenes NBRC 14944 s 10 2
Chryseobacterium indologenes s 10 2
Chryseobacterium gleum ATCC 35910 s 10 2
Chryseobacterium gregarium DSM 19109 s 10 2
Chryseobacterium haifense DSM 19056 s 5 1
Leuconostoc mesenteroides subsp. mesenteroides J18 s 5 1
Leuconostoc mesenteroides KFRI-MG s 5 1
Chryseobacterium indologenes s 10 2
Chryseobacterium sp. MOF25P s 10 2
Chryseobacterium sp. BGARF1 s 10 2
Endozoicomonas atrinae s 5 1
Chryseobacterium indologenes s 10 2
Chryseobacterium contaminans s 10 2
Chryseobacterium artocarpi s 10 2
Chryseobacterium indologenes s 10 2
Chryseobacterium piscicola s 16 3
Chryseobacterium oranimense s 10 2
Chryseobacterium contaminans s 10 2
Chryseobacterium bovis DSM 19482 s 5 1
Chryseobacterium indologenes s 10 2
Chryseobacterium indologenes s 10 2
Chryseobacterium sp. T16E-39 s 16 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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