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Genomes encoding eukaryotic-like proteins

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PF03452 Anp1

Copy number in non-pathogens:
Mean=0.01 Stddev=0.08

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR034 s 12 1
Verrucomicrobium sp. BvORR106 s 12 1
Mesorhizobium loti MAFF303099 s 12 1
Mesorhizobium plurifarium s 12 1
Mesorhizobium plurifarium s 12 1
Mesorhizobium plurifarium s 12 1
Mesorhizobium plurifarium s 12 1
Mesorhizobium opportunistum WSM2075 p 12 1
Mesorhizobium loti NZP2037 s 25 2
Mesorhizobium sp. LNHC221B00 s 12 1
Streptomyces ipomoeae 91-03 s 12 1
Mesorhizobium ciceri CMG6 s 12 1
Azospirillum halopraeferens DSM 3675 s 12 1
Mesorhizobium erdmanii USDA 3471 s 12 1
Mesorhizobium loti CJ3sym s 12 1
Paenibacillus polymyxa s 12 1
Methylobacterium mesophilicum SR1.6/6 s 12 1
Mesorhizobium amorphae CCNWGS0123 s 12 1
Mesorhizobium loti R7A s 12 1
Mesorhizobium sp. WSM1293 s 12 1
Mesorhizobium sp. WSM3626 s 12 1
Mesorhizobium loti R88b s 12 1
Paenibacillus polymyxa s 12 1
Mesorhizobium huakuii 7653R p 25 2
Bacillus cereus s 12 1
Mesorhizobium amorphae CCNWGS0123 s 12 1
Paenibacillus polymyxa s 12 1
Mesorhizobium sp. WSM1497 s 12 1
Mesorhizobium loti NZP2037 s 25 2
Bacillus cereus s 12 1
Paenibacillus odorifer s 12 1
Paenibacillus odorifer s 12 1
Bacillus cereus s 12 1
Paenibacillus polymyxa s 12 1
Streptomyces rhizosphaericus s 12 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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