Metamenu

  • University of Vienna
  • Research network CMM
  • Dept of Microbiology and Ecosystem Science
  • CUBE
  • VOGDB
  • SIMAP
  • Gepard
  • GenSkew
  • ConsPred
  • PICA
effectors.org, University of Vienna

Search form

Navigation

  • Home
  • News
  • Browse
  • Job submission
  • Help
  • Methods
  • Download
  • Publications
  • Links

Genomes encoding eukaryotic-like proteins

  • CSV
  • XLS
  • XML

PF03659 Glycosyl hydrolase family 71

Copy number in non-pathogens:
Mean=0.02 Stddev=0.16

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Hungatella hathewayi DSM 13479 s 6 1
Treponema brennaborense DSM 12168 s 6 1
Streptomyces thermolilacinus SPC6 s 6 1
Didymococcus colitermitum TAV2 s 25 4
Opitutaceae bacterium TAV1 s 25 4
Burkholderia sp. WSM2230 s 6 1
Burkholderia sp. WSM2232 s 6 1
Bradyrhizobium sp. Ai1a-2 s 6 1
Bradyrhizobium japonicum USDA 4 s 6 1
Cupriavidus sp. amp6 s 6 1
Streptomyces sp. SA3_actF s 6 1
Burkholderia sp. JPY366 s 6 1
Burkholderia ambifaria AMMD s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia ambifaria AMMD s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Burkholderia cepacia s 6 1
Bradyrhizobium liaoningense s 6 1
Mycobacterium scrofulaceum s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1
Burkholderia cenocepacia s 6 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

  • +43 1 4277 76681
  • +43 1 4277 876681
  • contact.cube@univie.ac.at
Computational Systems Biology, University of Vienna
  • Contact
  • Imprint
  • Privacy Policy
University Vienna