Metamenu

Genomes encoding eukaryotic-like proteins

PF04326 Putative DNA-binding domain

Copy number in non-pathogens:
Mean=0.48 Stddev=0.94

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bifidobacterium bifidum s 4 5
Bifidobacterium breve s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. longum s 4 5
Bifidobacterium longum subsp. longum s 4 5
Bifidobacterium longum subsp. longum JCM 1217 s 4 5
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 5
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 s 4 5
Streptococcus pneumoniae s 4 5
Streptococcus pneumoniae s 4 5
Streptococcus pneumoniae s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bacteroides xylanisolvens SD CC 1b s 4 5
Bacteroides xylanisolvens SD CC 2a s 4 5
Mucinivorans hirudinis s 4 5
Bifidobacterium longum subsp. longum CECT 7347 s 5 6
Bacteroides fragilis s 4 5
Bacteroides vulgatus s 5 6
Faecalicatena contorta s 4 5
Collinsella ihuae s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium longum s 4 5
Bacteroides xylanisolvens SD CC 1b s 4 5
Bacteroides ovatus SD CMC 3f s 4 5
Bacteroides finegoldii DSM 17565 s 5 6
Butyrivibrio crossotus DSM 2876 s 4 5
Oribacterium sp. oral taxon 078 str. F0262 s 4 5
Bacteroides sp. 3_1_13 s 7 8
Parabacteroides sp. D26 s 5 6
Eggerthella sp. HGA1 s 4 5
Paraprevotella clara YIT 11840 s 4 5
Fusobacterium nucleatum 13_3C s 4 5
Bifidobacterium longum subsp. longum 2-2B s 5 6
Bifidobacterium longum subsp. longum 35B s 5 6
Lachnospiraceae bacterium A4 s 5 6
Lachnospiraceae bacterium 28-4 s 4 5
Lachnospiraceae bacterium M18-1 s 5 6
Eubacterium plexicaudatum ASF492 s 7 8
Clostridium sp. ASF502 s 11 11
Parabacteroides sp. ASF519 s 5 6
Didymococcus colitermitum TAV2 s 5 6
[Eubacterium] cellulosolvens 6 s 4 5
Bacteroides fragilis str. 3774 T13 s 4 5
Bacteroides fragilis str. S36L5 s 4 5
Bacteroides fragilis str. S36L11 s 4 5
Bacteroides fragilis str. 3998T(B)3 s 4 5
Bacteroides fragilis str. S36L12 s 4 5
Catonella morbi ATCC 51271 s 7 8
Bacteroides pyogenes F0041 s 4 5
Actinomyces dentalis DSM 19115 s 4 5
Runella zeae DSM 19591 s 4 5
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 5
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 s 4 5
Bacteroides sp. 1_1_6 s 4 5
Parabacteroides sp. 2_1_7 s 4 5
Bacteroides sp. D1 s 4 5
Bacteroides dorei 5_1_36/D4 s 4 5
Bacteroides sp. 2_1_22 s 4 5
Bacteroides sp. 2_1_33B s 5 6
Bacteroides sp. 3_1_33FAA s 7 8
Parabacteroides sp. 20_3 s 4 5
Bacteroides sp. 3_1_40A s 4 5
Erysipelotrichaceae bacterium 6_1_45 s 4 5
Eggerthella sp. 1_3_56FAA s 5 6
Bacteroides sp. 1_1_30 s 5 6
Prevotella sp. C561 s 4 5
Hungatella hathewayi WAL-18680 s 5 6
Oribacterium asaccharolyticum ACB7 s 4 5
Bacteroides cellulosilyticus CL02T12C19 s 5 6
Bacteroides ovatus CL02T12C04 s 4 5
Bacteroides xylanisolvens CL03T12C04 s 4 5
Parabacteroides distasonis CL03T12C09 s 4 5
Parabacteroides distasonis CL09T03C24 s 5 6
Parabacteroides goldsteinii CL02T12C30 s 5 6
Parabacteroides merdae CL03T12C32 s 4 5
Bifidobacterium bifidum IPLA 20015 s 6 7
Bifidobacterium longum D2957 s 4 5
Parabacteroides sp. D25 s 4 5
Corynebacterium pyruviciproducens ATCC BAA-1742 s 5 6
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 5
Prevotella ruminicola 23 s 5 6
Bacteroides vulgatus ATCC 8482 s 4 5
Mycoplasma fermentans M64 s 4 5
Fusobacterium sp. OBRC1 s 4 5
Bifidobacterium gallinarum s 5 6
Bifidobacterium longum subsp. longum s 4 5
Bifidobacterium pullorum s 4 5
Bifidobacterium stellenboschense s 9 9
Anaerostipes hadrus s 4 5
Bacteroides fragilis s 4 5
Selenomonas ruminantium AC2024 s 6 7
Ruminococcus sp. HUN007 s 4 5
Fibrobacter intestinalis s 4 5
Prevotella ruminicola s 4 5
Actinomyces israelii DSM 43320 s 4 5
Fusobacterium necrophorum BFTR-2 s 5 6
Fusobacterium necrophorum DAB s 4 5
Bacteroides fragilis s 5 6
Corynebacterium imitans s 4 5
Bifidobacterium bifidum s 4 5
Bifidobacterium bifidum s 5 6
Bifidobacterium longum subsp. infantis s 4 5
Bifidobacterium longum subsp. longum s 4 5
Corynebacterium riegelii s 4 5
Bacteroides xylanisolvens s 6 7
Prevotella ruminicola s 4 5
Prevotella ruminicola s 4 5
Bifidobacterium longum s 4 5
Parabacteroides sp. YL27 s 6 7
Lachnoclostridium sp. YL32 s 4 5
Bacteroides ovatus s 4 5
Flavobacterium succinicans s 4 5
Eisenbergiella tayi s 4 5
Eisenbergiella tayi s 4 5
Eisenbergiella tayi s 6 7
Eisenbergiella tayi s 4 5
Eisenbergiella tayi s 4 5
Anaerolineaceae bacterium oral taxon 439 s 7 8
Bifidobacterium longum subsp. infantis s 4 5
Bacteroides thetaiotaomicron s 6 7
Actinomyces oris s 4 5
Actinomyces oris s 4 5
Actinomyces oris s 4 5
Faecalibaculum rodentium s 9 9
Bacteroides xylanisolvens s 4 5
Bacteroides dorei s 4 5
Bifidobacterium longum s 4 5
Bifidobacterium bifidum s 4 5
Bifidobacterium longum subsp. infantis s 4 5
Bacteroides thetaiotaomicron VPI-5482 s 6 7

*p=pathogen;s=symbiont