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Genomes encoding eukaryotic-like proteins

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PF04450 Peptidase of plants and bacteria

Copy number in non-pathogens:
Mean=0.03 Stddev=0.24

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Haloferula sp. BvORR071 s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides plebeius DSM 17135 s 8 2
Paenibacillus sp. HGF7 s 8 2
Paenibacillus alvei A6-6i-x s 12 3
Pseudoalteromonas luteoviolacea 2ta16 s 12 3
Pseudoalteromonas luteoviolacea S4054 s 12 3
Tenacibaculum ovolyticum DSM 18103 s 8 2
Alistipes onderdonkii WAL 8169 = DSM 19147 s 12 3
Bacteroides sp. 1_1_6 s 8 2
Paenibacillus alvei DSM 29 s 8 2
Bacteroides faecis MAJ27 s 8 2
Pseudoalteromonas sp. NJ631 s 16 4
Pseudoalteromonas flavipulchra JG1 s 16 4
Paenibacillus sp. HGH0039 s 8 2
Pedobacter borealis DSM 19626 s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides faecis MAJ27 s 8 2
Bacteroides thetaiotaomicron s 8 2
Bacteroides thetaiotaomicron VPI-5482 s 8 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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