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Genomes encoding eukaryotic-like proteins

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PF04784 Protein of unknown function, DUF547

Copy number in non-pathogens:
Mean=0.13 Stddev=0.46

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Phycisphaera mikurensis NBRC 102666 s 8 4
Zobellia galactanivorans s 4 2
Cellulophaga algicola DSM 14237 s 6 3
Cellulophaga baltica NN016038 s 4 2
Pseudoalteromonas sp. TB25 s 6 3
Pseudoalteromonas sp. AC163 s 4 2
Pseudoalteromonas sp. NW 4327 s 6 3
Endozoicomonas elysicola DSM 22380 s 4 2
Tenacibaculum ovolyticum DSM 18103 s 6 3
Aquimarina agarivorans s 10 5
Aquimarina agarilytica ZC1 s 8 4
Gillisia sp. CAL575 s 4 2
Acaryochloris marina MBIC11017 s 4 2
Maribacter antarcticus DSM 21422 s 6 3
Leeuwenhoekiella sp. MAR_2009_132 s 4 2
Endozoicomonas elysicola s 4 2
Endozoicomonas montiporae s 4 2
Endozoicomonas numazuensis s 8 4
Colwellia psychrerythraea s 6 3
Flaviramulus ichthyoenteri Th78 s 4 2
Endozoicomonas arenosclerae s 8 4
Legionella pneumophila s 4 2
Croceitalea dokdonensis DOKDO 023 s 4 2
Endozoicomonas atrinae s 4 2
Polaribacter vadi s 4 2
Maribacter ulvicola s 4 2
Flavobacterium chilense s 4 2
Cellulophaga fucicola s 4 2
Polaribacter vadi s 4 2
Polaribacter sp. BM10 s 4 2
Zobellia galactanivorans s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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