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Genomes encoding eukaryotic-like proteins

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PF04810 Sec23/Sec24 zinc finger

Copy number in non-pathogens:
Mean=0.00 Stddev=0.03

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptococcus sobrinus TCI-357 s 30 1
Streptococcus sobrinus TCI-175 s 30 1
Streptococcus sobrinus TCI-79 s 30 1
Streptococcus sobrinus TCI-342 s 30 1
Streptococcus sobrinus TCI-352 s 30 1
Streptococcus sobrinus TCI-215 s 30 1
Streptococcus sobrinus TCI-345 s 30 1
Streptococcus sobrinus TCI-355 s 30 1
Streptococcus sobrinus TCI-363 s 30 1
Streptococcus sobrinus TCI-366 s 30 1
Streptococcus sobrinus TCI-367 s 30 1
Streptococcus sobrinus TCI-392 s 30 1
Streptococcus sobrinus TCI-396 s 30 1
Streptococcus sobrinus TCI-118 s 30 1
Streptococcus sobrinus TCI-77 s 30 1
Streptococcus sobrinus TCI-9 s 30 1
Clostridium celatum DSM 1785 s 30 1
Ruminococcus albus AD2013 s 30 1
Lachnospiraceae oral taxon 107 str. F0167 s 30 1
Corynebacterium jeikeium s 30 1
Shuttleworthia sp. MSX8B s 30 1
Ruminococcus sp. HUN007 s 30 1
Erysipelotrichaceae bacterium NK3D112 s 30 1
Pseudobutyrivibrio sp. LB2011 s 30 1
Exiguobacterium mexicanum s 30 1
[Clostridium] innocuum s 30 1
Corynebacterium testudinoris s 30 1
Lactococcus lactis subsp. lactis s 30 1
Ruminococcus flavefaciens s 30 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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