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Genomes encoding eukaryotic-like proteins

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PF05049 Interferon-inducible GTPase (IIGP)

Copy number in non-pathogens:
Mean=0.00 Stddev=0.05

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Oceanobacillus picturae s 18 1
Enterobacter cloacae s 18 1
Bacillus jeddahensis s 18 1
Acidaminococcus sp. BV3L6 s 37 2
Vibrio parahaemolyticus s 18 1
Capnocytophaga sp. oral taxon 863 str. F0517 s 18 1
Acidaminococcus intestini DSM 21505 s 37 2
Actinotignum urinale DSM 15805 s 18 1
Fusobacterium hwasookii ChDC F128 s 18 1
Ruminococcus flavefaciens AE3010 s 18 1
Acidaminococcus sp. D21 s 37 2
Capnocytophaga granulosa ATCC 51502 s 18 1
Acidaminococcus sp. HPA0509 s 37 2
Acidaminococcus fermentans DSM 20731 s 37 2
Acidaminococcus intestini RyC-MR95 s 37 2
Vibrio parahaemolyticus s 18 1
Vibrio parahaemolyticus s 18 1
Vibrio parahaemolyticus s 18 1
Vibrio parahaemolyticus s 18 1
Vibrio parahaemolyticus s 18 1
Vibrio parahaemolyticus s 18 1
Staphylococcus agnetis s 18 1
Schwartzia succinivorans DSM 10502 s 18 1
Staphylococcus agnetis s 18 1
Vibrio splendidus s 18 1
Paenibacillus odorifer s 18 1
Staphylococcus agnetis s 18 1
Staphylococcus agnetis s 18 1
Staphylococcus agnetis s 18 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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