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Genomes encoding eukaryotic-like proteins

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PF05448 Acetyl xylan esterase (AXE1)

Copy number in non-pathogens:
Mean=0.28 Stddev=0.71

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR034 s 6 5
Verrucomicrobium sp. BvORR106 s 6 5
Bacteroides ovatus s 5 4
Chthoniobacter flavus Ellin428 s 6 5
Bacteroides cellulosilyticus DSM 14838 s 5 4
Kutzneria sp. 744 s 5 4
Didymococcus colitermitum TAV2 s 18 13
Rhodopirellula baltica SWK14 s 5 4
Cyclobacterium marinum DSM 745 s 5 4
Opitutaceae bacterium TAV1 s 15 11
Bacteroides cellulosilyticus WH2 s 5 4
Gemella cuniculi DSM 15828 s 5 4
Runella zeae DSM 19591 s 5 4
Bacteroides sp. D2 s 5 4
Prevotella buccae D17 s 5 4
Bacteroides sp. 3_1_23 s 8 6
Bacteroides ovatus 3_8_47FAA s 5 4
Bacteroides sp. D22 s 5 4
Bacteroides ovatus CL03T12C18 s 5 4
Sphingobacterium paucimobilis HER1398 s 5 4
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 5 4
Paenibacillus mucilaginosus 3016 s 5 4
Arenibacter algicola s 6 5
Streptomyces europaeiscabiei s 5 4
Microbacterium azadirachtae s 5 4
Paenibacillus polymyxa s 5 4
Opitutaceae bacterium TSB47 s 9 7
Bacteroides ovatus s 5 4

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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