Metamenu

Genomes encoding eukaryotic-like proteins

PF05970 PIF1-like helicase

Copy number in non-pathogens:
Mean=0.13 Stddev=0.36

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Prevotella denticola DSM 20614 = JCM 13449 s 5 2
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 5 2
Prevotella scopos JCM 17725 s 5 2
Prevotella timonensis 4401737 = DSM 22865 = JCM 15640 s 5 2
Prevotella shahii DSM 15611 = JCM 12083 s 5 2
Prevotella corporis DSM 18810 = JCM 8529 s 5 2
Porphyromonas gingivalis s 5 2
Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 s 5 2
Chryseobacterium indologenes NBRC 14944 s 5 2
Bifidobacterium pseudocatenulatum s 5 2
Porphyromonas gingivalis ATCC 33277 s 5 2
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 5 2
Porphyromonas gingivalis TDC60 s 5 2
Bacteroides fragilis NCTC 9343 s 5 2
Prevotella timonensis 4401737 = DSM 22865 = JCM 15640 s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bacteroides fragilis 638R s 5 2
Flavobacterium branchiophilum FL-15 s 5 2
Bacteroides xylanisolvens SD CC 1b s 5 2
Bacteroides xylanisolvens SD CC 2a s 5 2
Parabacteroides distasonis s 5 2
Bacteroides thetaiotaomicron s 5 2
Bacteroides fragilis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Porphyromonas gingivalis s 5 2
Parabacteroides distasonis s 5 2
Parabacteroides distasonis s 7 3
Bacteroides thetaiotaomicron s 5 2
Bacteroides thetaiotaomicron s 7 3
Bifidobacterium adolescentis s 5 2
Bacteroides thetaiotaomicron s 5 2
Parabacteroides distasonis s 5 2
Bacteroides ovatus s 5 2
Bacteroides vulgatus s 5 2
Bacteroides thetaiotaomicron s 5 2
Parabacteroides distasonis s 5 2
Chryseobacterium indologenes s 5 2
Bifidobacterium longum s 5 2
Bifidobacterium longum s 5 2
Bifidobacterium longum s 5 2
Bacteroides stercoris ATCC 43183 s 5 2
Bacteroides intestinalis DSM 17393 s 5 2
Bacteroides dorei DSM 17855 s 7 3
Bacteroides eggerthii DSM 20697 s 5 2
Prevotella melaninogenica ATCC 25845 s 5 2
Prevotella timonensis CRIS 5C-B1 s 5 2
Prevotella buccalis ATCC 35310 s 5 2
Bacteroides xylanisolvens SD CC 1b s 5 2
Bacteroides xylanisolvens SD CC 2a s 5 2
Prevotella bivia JCVIHMP010 s 5 2
Bacteroides ovatus SD CMC 3f s 5 2
Bacteroides cellulosilyticus DSM 14838 s 5 2
Bacteroides finegoldii DSM 17565 s 5 2
Bifidobacterium breve DSM 20213 = JCM 1192 s 5 2
Parabacteroides johnsonii DSM 18315 s 5 2
Prevotella copri DSM 18205 s 7 3
Prevotella oris F0302 s 5 2
Prevotella veroralis F0319 s 5 2
Prevotella denticola F0289 s 5 2
Prevotella disiens FB035-09AN s 5 2
Bacteroides sp. 3_1_13 s 5 2
Parabacteroides sp. D26 s 5 2
Prevotella bergensis DSM 17361 s 5 2
Bacteroides clarus YIT 12056 s 5 2
Bacteroides fluxus YIT 12057 s 5 2
Prevotella denticola CRIS 18C-A s 5 2
Prevotella buccae ATCC 33574 s 5 2
Prevotella sp. oral taxon 472 str. F0295 s 5 2
Prevotella multiformis DSM 16608 s 5 2
Prevotella nigrescens ATCC 33563 s 5 2
Bacteroides caccae ATCC 43185 s 5 2
Bifidobacterium adolescentis L2-32 s 5 2
Parabacteroides merdae ATCC 43184 s 5 2
Bacteroides ovatus ATCC 8483 s 5 2
Prevotella sp. oral taxon 306 str. F0472 s 5 2
Porphyromonas gingivalis W50 s 5 2
Prevotella baroniae F0067 s 5 2
Prevotella sp. MSX73 s 5 2
Parabacteroides sp. ASF519 s 5 2
Prevotella bivia DSM 20514 s 5 2
Prevotella stercorea DSM 18206 s 5 2
Bacteroides fragilis str. J-143-4 s 5 2
Bacteroides fragilis str. I1345 s 5 2
Bacteroides fragilis str. J38-1 s 5 2
Bacteroides fragilis str. A7 (UDC12-2) s 5 2
Bacteroides fragilis str. Ds-233 s 5 2
Bacteroides fragilis str. DS-208 s 5 2
Bacteroides fragilis str. DS-71 s 5 2
Bacteroides fragilis str. DS-166 s 5 2
Bacteroides fragilis str. 20793-3 s 5 2
Bacteroides fragilis str. 2-F-2 #4 s 5 2
Bacteroides fragilis str. 2-F-2 #7 s 5 2
Bacteroides fragilis str. 3988 T1 s 5 2
Bacteroides fragilis str. S13 L11 s 5 2
Bacteroides fragilis str. S23 R14 s 5 2
Bacteroides fragilis str. 1007-1-F #7 s 5 2
Bacteroides fragilis str. 1007-1-F #8 s 5 2
Bacteroides fragilis str. 1007-1-F #9 s 5 2
Bacteroides fragilis str. 1009-4-F #7 s 5 2
Bacteroides fragilis str. 1007-1-F #10 s 5 2
Bacteroides fragilis str. 1009-4-F #10 s 5 2
Bacteroides fragilis str. 3397 T14 s 5 2
Bacteroides fragilis str. 3397 N2 s 5 2
Bacteroides fragilis str. 3719 A10 s 5 2
Bacteroides fragilis str. 3774 T13 s 5 2
Bacteroides fragilis str. 2-F-2 #5 s 5 2
Bacteroides fragilis str. 3783N1-2 s 5 2
Bacteroides fragilis str. 3783N1-6 s 5 2
Bacteroides fragilis str. 3397 N3 s 5 2
Bacteroides fragilis str. 3719 T6 s 5 2
Bacteroides fragilis str. 3783N1-8 s 5 2
Bacteroides fragilis str. 3996 N(B) 6 s 5 2
Bacteroides fragilis str. 3783N2-1 s 5 2
Bacteroides fragilis str. 3998 T(B) 4 s 5 2
Bacteroides fragilis str. 3986 T(B)9 s 5 2
Bacteroides fragilis str. 3976T7 s 5 2
Bacteroides fragilis str. 3986T(B)10 s 5 2
Bacteroides fragilis str. 3976T8 s 5 2
Bacteroides fragilis str. 3986 T(B)13 s 5 2
Bacteroides fragilis str. 3986 N(B)22 s 5 2
Bacteroides fragilis str. 3988T(B)14 s 5 2
Bacteroides fragilis str. S6L3 s 5 2
Bacteroides fragilis str. S6L8 s 5 2
Bacteroides fragilis str. S6R5 s 5 2
Bacteroides fragilis str. S6R6 s 5 2
Bacteroides fragilis str. S24L15 s 5 2
Bacteroides fragilis str. S24L26 s 5 2
Bacteroides fragilis str. S24L34 s 5 2
Bacteroides fragilis str. S36L5 s 5 2
Bacteroides fragilis str. S36L11 s 5 2
Bacteroides fragilis str. S23L24 s 5 2
Bacteroides fragilis str. S38L3 s 5 2
Bacteroides fragilis str. S38L5 s 5 2
Bacteroides fragilis str. 3-F-2 #6 s 5 2
Bacteroides fragilis str. 34-F-2 #13 s 5 2
Bacteroides fragilis str. 1007-1-F #3 s 5 2
Bacteroides fragilis str. 1007-1-F #4 s 5 2
Bacteroides fragilis str. 3986 N(B)19 s 5 2
Bacteroides fragilis str. 3725 D9(v) s 5 2
Bacteroides fragilis str. 3998T(B)3 s 5 2
Bacteroides fragilis str. S36L12 s 5 2
Prevotella sp. BV3P1 s 5 2
Prevotella saccharolytica F0055 s 5 2
Alloscardovia omnicolens F0580 s 5 2
Porphyromonas gingivalis F0568 s 5 2
Porphyromonas gingivalis F0569 s 5 2
Porphyromonas gingivalis F0570 s 5 2
Prevotella disiens JCM 6334 = ATCC 29426 s 5 2
Porphyromonas gingivalis W4087 s 5 2
Prevotella sp. F0091 s 5 2
Porphyromonas gingivalis F0185 s 5 2
Porphyromonas gingivalis F0566 s 5 2
Bacteroides cellulosilyticus WH2 s 5 2
Prevotella oris DSM 18711 = JCM 12252 s 5 2
Prevotella albensis DSM 11370 = JCM 12258 s 5 2
Prevotella timonensis 4401737 = DSM 22865 = JCM 15640 s 5 2
Prevotella baroniae DSM 16972 = JCM 13447 s 5 2
Parabacteroides gordonii DSM 23371 s 5 2
Prevotella denticola DSM 20614 = JCM 13449 s 5 2
Prevotella corporis DSM 18810 = JCM 8529 s 5 2
Dysgonomonas capnocytophagoides DSM 22835 s 5 2
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 5 2
Prevotella veroralis DSM 19559 = JCM 6290 s 5 2
Bacteroides gallinarum DSM 18171 = JCM 13658 s 5 2
Porphyromonas gulae DSM 15663 s 5 2
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 5 2
Bacteroides fragilis 3_1_12 s 5 2
Bacteroides sp. 1_1_6 s 5 2
Parabacteroides sp. 2_1_7 s 5 2
Bacteroides sp. 2_2_4 s 5 2
Bacteroides sp. 3_2_5 s 5 2
Bacteroides sp. 4_3_47FAA s 5 2
Bacteroides sp. D1 s 5 2
Bacteroides sp. D2 s 5 2
Bacteroides dorei 5_1_36/D4 s 5 2
Bacteroides sp. 2_1_16 s 7 3
Bacteroides sp. 2_1_22 s 5 2
Bacteroides sp. 2_1_33B s 5 2
Bacteroides sp. 3_1_33FAA s 5 2
Bacteroides sp. D20 s 5 2
Parabacteroides sp. D13 s 5 2
Parabacteroides sp. 20_3 s 7 3
Bacteroides sp. 3_1_23 s 7 3
Bacteroides sp. 3_1_40A s 5 2
Bacteroides sp. 4_1_36 s 5 2
Bacteroides ovatus 3_8_47FAA s 5 2
Prevotella melaninogenica D18 s 5 2
Bacteroides sp. 3_1_19 s 5 2
Bacteroides sp. D22 s 5 2
Bacteroides sp. 1_1_30 s 7 3
Prevotella sp. C561 s 5 2
Prevotella oris C735 s 5 2
Bacteroides oleiciplenus YIT 12058 s 5 2
Dysgonomonas gadei ATCC BAA-286 s 5 2
Prevotella histicola F0411 s 5 2
Bacteroides caccae CL03T12C61 s 5 2
Bacteroides cellulosilyticus CL02T12C19 s 5 2
Bacteroides dorei CL02T00C15 s 5 2
Bacteroides dorei CL02T12C06 s 5 2
Bacteroides dorei CL03T12C01 s 5 2
Bacteroides fragilis CL03T00C08 s 5 2
Bacteroides fragilis CL03T12C07 s 5 2
Bacteroides fragilis CL05T12C13 s 5 2
Bacteroides fragilis CL07T00C01 s 5 2
Bacteroides fragilis CL07T12C05 s 5 2
Bacteroides nordii CL02T12C05 s 5 2
Bacteroides ovatus CL02T12C04 s 5 2
Bacteroides ovatus CL03T12C18 s 5 2
Bacteroides salyersiae CL02T12C01 s 5 2
Bacteroides uniformis CL03T00C23 s 5 2
Bacteroides uniformis CL03T12C37 s 5 2
Bacteroides xylanisolvens CL03T12C04 s 5 2
Parabacteroides distasonis CL03T12C09 s 5 2
Parabacteroides distasonis CL09T03C24 s 7 3
Parabacteroides goldsteinii CL02T12C30 s 5 2
Parabacteroides johnsonii CL02T12C29 s 7 3
Parabacteroides merdae CL03T12C32 s 5 2
Parabacteroides merdae CL09T00C40 s 5 2
Bacteroides fragilis HMW 610 s 5 2
Bacteroides fragilis HMW 615 s 5 2
Bacteroides fragilis HMW 616 s 5 2
Bacteroides faecis MAJ27 s 5 2
Porphyromonas gingivalis SJD2 s 5 2
Prevotella sp. oral taxon 317 str. F0108 s 5 2
Parabacteroides sp. D25 s 5 2
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 5 2
Bacteroides stercoris CC31F s 5 2
Pedobacter borealis DSM 19626 s 5 2
Prevotella sp. ICM33 s 5 2
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 5 2
Porphyromonas gingivalis W83 s 5 2
Campylobacter lari RM2100 s 5 2
Bacteroides vulgatus ATCC 8482 s 5 2
Parabacteroides distasonis ATCC 8503 s 5 2
Bifidobacterium adolescentis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Porphyromonas gingivalis s 5 2
Prevotella sp. HUN102 s 5 2
Prevotella sp. MA2016 s 5 2
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 5 2
Prevotella bivia DNF00188 s 5 2
Prevotella histicola JCM 15637 = DNF00424 s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides thetaiotaomicron s 5 2
Bifidobacterium bifidum s 5 2
Bifidobacterium longum subsp. longum s 5 2
Prevotella buccae s 5 2
Bacteroides thetaiotaomicron s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Prevotella bivia s 5 2
Bacteroides fragilis s 5 2
Campylobacter lari s 5 2
Campylobacter lari s 5 2
Campylobacter lari s 5 2
Porphyromonas gingivalis s 5 2
Parabacteroides sp. HGS0025 s 5 2
Parabacteroides gordonii MS-1 s 5 2
Parabacteroides goldsteinii DSM 19448 = WAL 12034 s 5 2
Bacteroides fragilis s 5 2
Bacteroides ovatus s 5 2
Bacteroides dorei CL03T12C01 s 5 2
Bifidobacterium longum subsp. longum s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides ovatus s 5 2
Bacteroides thetaiotaomicron s 5 2
Prevotella corporis s 5 2
Prevotella bivia s 5 2
Prevotella bivia s 5 2
Bacteroides caecimuris s 5 2
Prevotella scopos JCM 17725 s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides ovatus s 5 2
Bacteroides fragilis s 5 2
Bifidobacterium longum s 5 2
Bifidobacterium adolescentis s 5 2
Bifidobacterium adolescentis s 5 2
Sulfurovum riftiae s 5 2
Porphyromonas gingivalis s 5 2
Bacteroides thetaiotaomicron s 5 2
Bacteroides vulgatus s 5 2
Bacteroides xylanisolvens s 5 2
Parabacteroides sp. YL27 s 5 2
Acinetobacter baumannii s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
Bacteroides xylanisolvens s 7 3
Bifidobacterium adolescentis s 7 3
Chryseobacterium artocarpi s 5 2
Chryseobacterium indologenes s 5 2
Bacteroides fragilis s 5 2
Flavobacterium succinicans s 5 2
Bacteroides ovatus s 5 2
Prevotella scopos JCM 17725 s 5 2
Bacteroides clarus YIT 12056 s 5 2
Bacteroides faecis MAJ27 s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides thetaiotaomicron s 5 2
Prevotella melaninogenica s 5 2
Chryseobacterium indologenes s 5 2
Flavobacterium columnare s 5 2
Bacteroides xylanisolvens s 5 2
Bacteroides xylanisolvens s 5 2
Bacteroides dorei s 5 2
Bacteroides ovatus s 5 2
Parabacteroides distasonis s 5 2
Bacteroides dorei s 5 2
Porphyromonas gingivalis s 5 2
Bacteroides fragilis YCH46 s 5 2
Bacteroides thetaiotaomicron VPI-5482 s 5 2

*p=pathogen;s=symbiont