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Genomes encoding eukaryotic-like proteins

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PF08030 Ferric reductase NAD binding domain

Copy number in non-pathogens:
Mean=0.00 Stddev=0.04

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Klebsiella oxytoca s 23 1
Pantoea vagans s 23 1
Cupriavidus sp. UYPR2.512 s 23 1
Veillonella seminalis ACS-216-V-Col6b s 23 1
Burkholderia gladioli 3848s-5 s 23 1
Pseudomonas syringae CC1629 s 23 1
Pseudomonas syringae CC1513 s 23 1
Pantoea agglomerans Tx10 s 23 1
Burkholderia gladioli BSR3 s 23 1
Acaryochloris marina MBIC11017 s 23 1
Rickettsia sp. MEAM1 (Bemisia tabaci) s 23 1
Pantoea agglomerans s 23 1
Colwellia psychrerythraea s 23 1
Serratia marcescens s 23 1
Shigella boydii s 23 1
Shigella boydii s 23 1
Shigella boydii s 23 1
Serratia marcescens s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Burkholderia ubonensis s 23 1
Pseudomonas fluorescens s 23 1
Pseudomonas fluorescens s 23 1
Pantoea agglomerans s 23 1
Pseudomonas syringae s 23 1
Pseudomonas syringae s 23 1
Burkholderia ubonensis s 23 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

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  • +43 1 4277 876681
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