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Genomes encoding eukaryotic-like proteins

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PF08787 Alginate lyase

Copy number in non-pathogens:
Mean=0.17 Stddev=0.75

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraglaciecola mesophila KMM 241 s 5 4
Vibrio halioticoli NBRC 102217 s 11 9
Vibrio splendidus s 6 5
Cellulophaga algicola DSM 14237 s 6 5
Vibrio sp. HENC-03 s 5 4
Cellulophaga baltica NN016038 s 6 5
Pseudomonas fluorescens Q8r1-96 s 5 4
Vibrio crassostreae 9ZC13 s 5 4
Vibrio splendidus 0407ZC148 s 5 4
Vibrio crassostreae 9CS106 s 6 5
Vibrio crassostreae 9ZC88 s 5 4
Pseudomonas mendocina ymp s 6 5
Vibrio fortis s 5 4
Pseudomonas brassicacearum s 6 5
Pseudomonas brassicacearum s 5 4
Pseudomonas sp. NFACC04-2 s 5 4
Pseudomonas brassicacearum s 5 4
Flaviramulus ichthyoenteri Th78 s 5 4
Pseudomonas fluorescens s 5 4
Pseudomonas fluorescens s 5 4
Vibrio lentus s 7 6
Pseudomonas brassicacearum s 5 4
Pseudomonas brassicacearum s 5 4
Vibrio splendidus s 5 4
Vibrio splendidus s 5 4
Vibrio splendidus s 5 4
Vibrio splendidus s 7 6
Vibrio splendidus s 7 6
Polaribacter reichenbachii s 5 4
Pseudomonas brassicacearum s 5 4
Pseudomonas brassicacearum s 5 4
Vibrio splendidus s 6 5
Vibrio splendidus s 5 4
Maribacter ulvicola s 5 4
Pseudomonas sp. NFACC16-2 s 5 4
Vibrio splendidus s 5 4
Vibrio splendidus s 7 6
Polaribacter reichenbachii s 5 4

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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