Genomes encoding eukaryotic-like proteins

PF09511 RNA ligase

Copy number in non-pathogens:
Mean=0.02 Stddev=0.16

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacillus pumilus s 6 1
Streptomyces scabiei s 6 1
Bifidobacterium pseudocatenulatum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. infantis 157F s 6 1
Kurthia sp. Dielmo s 6 1
Bradyrhizobium sp. ORS 278 s 6 1
Bifidobacterium longum subsp. longum CECT 7347 s 6 1
Bifidobacterium longum subsp. infantis s 6 1
Bacillus pumilus s 6 1
Bifidobacterium adolescentis s 6 1
Clostridioides difficile s 6 1
Cardiobacterium hominis s 6 1
Mucispirillum schaedleri ASF457 s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium longum s 12 2
Rhizobium leguminosarum bv. trifolii WSM2304 s 6 1
Campylobacter gracilis RM3268 s 6 1
Bifidobacterium longum subsp. longum ATCC 55813 s 6 1
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 s 6 1
Brachyspira murdochii DSM 12563 s 6 1
Neisseria flavescens SK114 s 6 1
Leptotrichia buccalis C-1013-b s 6 1
Veillonella parvula DSM 2008 s 6 1
Leptotrichia goodfellowii F0264 s 6 1
Eikenella corrodens ATCC 23834 s 6 1
Fusobacterium periodonticum ATCC 33693 s 6 1
Kingella oralis ATCC 51147 s 6 1
Leptotrichia hofstadii F0254 s 6 1
Neisseria elongata subsp. glycolytica ATCC 29315 s 6 1
Neisseria flavescens NRL30031/H210 s 6 1
Neisseria sicca ATCC 29256 s 6 1
Neisseria subflava NJ9703 s 6 1
Veillonella dispar ATCC 17748 s 6 1
Veillonella parvula ATCC 17745 s 6 1
Eikenella corrodens CC92I s 6 1
Rothia dentocariosa ATCC 17931 s 6 1
Cardiobacterium hominis ATCC 15826 s 6 1
Veillonella parvula ACS-068-V-Sch12 s 6 1
Actinomyces sp. oral taxon 171 str. F0337 s 6 1
Methylobacterium sp. 4-46 s 6 1
Bifidobacterium adolescentis L2-32 s 6 1
Coprococcus eutactus ATCC 27759 s 6 1
Fusobacterium nucleatum 13_3C s 6 1
Helicobacter canis NCTC 12740 s 6 1
Neisseria sicca VK64 s 6 1
Rothia aeria F0474 s 6 1
Actinomyces massiliensis F0489 s 6 1
Bifidobacterium longum subsp. longum 44B s 6 1
Bifidobacterium longum subsp. longum 1-6B s 6 1
Bifidobacterium longum subsp. longum 2-2B s 6 1
Bifidobacterium longum subsp. longum 35B s 6 1
Brachyspira hampsonii 30446 s 6 1
Rivularia sp. PCC 7116 s 6 1
Moraxella boevrei DSM 14165 s 6 1
Rhizobium leguminosarum bv. trifolii WSM597 s 6 1
Mucispirillum schaedleri ASF457 s 6 1
Cardiobacterium valvarum F0432 s 6 1
Fusobacterium sp. oral taxon 370 str. F0437 s 6 1
Actinomyces sp. oral taxon 448 str. F0400 s 6 1
Neisseria macacae ATCC 33926 s 6 1
Bacillus licheniformis CG-B52 s 6 1
Salmonella enterica subsp. enterica serovar Heidelberg s 6 1
Salmonella enterica subsp. enterica serovar Dublin s 6 1
Lactobacillus saerimneri DSM 16049 s 6 1
Rhodobacteraceae bacterium KLH11 s 6 1
Rothia aeria F0184 s 6 1
Leptotrichia sp. oral taxon 225 str. F0581 s 6 1
Leptotrichia sp. oral taxon 879 str. F0557 s 6 1
Sinorhizobium meliloti GVPV12 s 6 1
Leptotrichia hofstadii DSM 21651 s 6 1
Actinomyces dentalis DSM 19115 s 6 1
Lactobacillus saerimneri DSM 16049 s 6 1
Succinimonas amylolytica DSM 2873 s 6 1
Leptotrichia trevisanii DSM 22070 s 6 1
Moraxella caprae DSM 19149 s 6 1
Actinomyces gerencseriae DSM 6844 s 6 1
Bifidobacterium longum DJO10A s 6 1
Conchiformibius kuhniae DSM 17694 s 6 1
Frankia sp. EUN1f s 6 1
Bifidobacterium longum subsp. infantis CCUG 52486 s 6 1
Fusobacterium periodonticum 1_1_41FAA s 6 1
Fusobacterium periodonticum 2_1_31 s 6 1
Fusobacterium nucleatum subsp. animalis 21_1A s 6 1
Fusobacterium nucleatum subsp. vincentii 4_1_13 s 6 1
Fusobacterium nucleatum subsp. animalis D11 s 6 1
Fusobacterium periodonticum D10 s 6 1
Fusobacterium nucleatum subsp. vincentii 3_1_36A2 s 6 1
Fusobacterium nucleatum subsp. animalis 3_1_33 s 6 1
Neisseria mucosa C102 s 6 1
Bacillus sp. BT1B_CT2 s 6 1
Neisseria sp. GT4A_CT1 s 6 1
Fusobacterium nucleatum subsp. vincentii 3_1_27 s 6 1
Bifidobacterium sp. 12_1_47BFAA s 6 1
Veillonella sp. 3_1_44 s 6 1
Veillonella sp. 6_1_27 s 6 1
Fusobacterium nucleatum subsp. polymorphum F0401 s 6 1
Rothia dentocariosa M567 s 6 1
Prevotella histicola F0411 s 12 2
Fusobacterium nucleatum subsp. animalis F0419 s 6 1
Fusobacterium nucleatum subsp. polymorphum ATCC 10953 s 6 1
Fusobacterium nucleatum CC53 s 6 1
Rhizobium sp. CCGE 510 s 6 1
Rhizobium etli CNPAF512 s 6 1
Rhizobium sp. CIAT894 s 6 1
Fusobacterium nucleatum subsp. vincentii ChDC F8 s 6 1
Fusobacterium hwasookii ChDC F300 s 6 1
Fusobacterium hwasookii ChDC F128 s 6 1
Fusobacterium hwasookii ChDC F145 s 6 1
Fusobacterium hwasookii ChDC F174 s 6 1
Fusobacterium hwasookii ChDC F206 s 6 1
Fusobacterium nucleatum subsp. animalis ChDC F324 s 6 1
Fusobacterium nucleatum subsp. fusiforme ATCC 51190 s 6 1
Bacillus sp. M 2-6 s 6 1
Clostridioides mangenotii TR s 12 2
Actinomyces massiliensis 4401292 s 6 1
Bacillus licheniformis WX-02 s 6 1
Lactobacillus saerimneri 30a s 6 1
Paenibacillus alvei DSM 29 s 6 1
Lactobacillus salivarius NIAS840 s 6 1
Bacillus xiamenensis s 6 1
Fusobacterium nucleatum W1481 s 6 1
Bifidobacterium longum E18 s 6 1
Brachyspira alvinipulli ATCC 51933 s 6 1
Butyrivibrio sp. FCS014 s 6 1
Fusobacterium nucleatum subsp. animalis 11_3_2 s 6 1
Fusobacterium nucleatum subsp. animalis F0419 s 6 1
Fusobacterium nucleatum CTI-6 s 6 1
Fusobacterium nucleatum CTI-5 s 6 1
Fusobacterium nucleatum CTI-3 s 6 1
Fusobacterium nucleatum CTI-1 s 6 1
Leptotrichia goodfellowii DSM 19756 s 6 1
Fusobacterium sp. CM21 s 6 1
Veillonella sp. AS16 s 6 1
Rhizobium etli CIAT 652 s 6 1
Bacillus licheniformis DSM 13 = ATCC 14580 s 6 1
Bifidobacterium longum subsp. longum BBMN68 s 6 1
Bifidobacterium longum DJO10A s 6 1
Bifidobacterium longum subsp. longum KACC 91563 s 6 1
Brachyspira intermedia PWS/A s 6 1
Fusobacterium nucleatum subsp. animalis 4_8 s 6 1
Bacillus licheniformis DSM 13 = ATCC 14580 s 6 1
Helicobacter hepaticus ATCC 51449 s 6 1
Fusobacterium sp. CM1 s 6 1
Fusobacterium sp. CM22 s 6 1
Fusobacterium sp. OBRC1 s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bifidobacterium adolescentis s 6 1
Bacillus pumilus s 6 1
Bacillus paralicheniformis s 6 1
Conchiformibius steedae DSM 2580 s 6 1
Butyrivibrio proteoclasticus FD2007 s 6 1
Butyrivibrio sp. LB2008 s 6 1
Treponema porcinum s 6 1
Actinomyces israelii DSM 43320 s 6 1
Alysiella crassa DSM 2578 s 6 1
Bacillus safensis s 6 1
Neisseria elongata subsp. glycolytica ATCC 29315 s 6 1
Bacillus velezensis s 6 1
Oribacterium sp. FC2011 s 6 1
Delftia tsuruhatensis s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Rothia dentocariosa s 6 1
Neisseria mucosa s 6 1
Rothia dentocariosa s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bacillus subtilis s 6 1
Bacillus subtilis s 6 1
Bacillus subtilis s 6 1
Neisseria meningitidis s 6 1
Neisseria meningitidis s 6 1
Neisseria meningitidis s 6 1
Rothia dentocariosa s 6 1
Rothia dentocariosa s 6 1
Neisseria elongata subsp. glycolytica s 6 1
Rothia dentocariosa s 6 1
Neisseria lactamica s 6 1
Neisseria meningitidis s 6 1
Neisseria elongata subsp. glycolytica s 6 1
Neisseria elongata subsp. glycolytica s 6 1
Neisseria meningitidis s 6 1
Eikenella corrodens s 6 1
Cardiobacterium hominis s 6 1
Cardiobacterium hominis s 6 1
Cardiobacterium hominis s 6 1
Rothia dentocariosa s 6 1
Neisseria meningitidis s 6 1
Neisseria lactamica s 6 1
Fusobacterium hwasookii ChDC F174 s 6 1
Fusobacterium hwasookii ChDC F206 s 6 1
Fusobacterium hwasookii ChDC F300 s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bifidobacterium bifidum s 6 1
Bacillus paralicheniformis s 6 1
Neisseria flavescens s 6 1
Bacillus pumilus s 6 1
Bacillus safensis s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Burkholderia ubonensis s 6 1
Bacillus safensis s 6 1
Bifidobacterium adolescentis s 6 1
Bacillus pumilus s 6 1
Corynebacterium mustelae s 6 1
Bacillus paralicheniformis s 6 1
Streptomyces scabiei s 6 1
Streptomyces europaeiscabiei s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum s 6 1
Fusobacterium nucleatum s 6 1
Bacillus pumilus s 6 1
Bacillus pumilus s 6 1
Bacillus safensis s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium phaseoli s 6 1
Rhizobium sp. N324 s 6 1
Rhizobium sp. N541 s 6 1
Rhizobium sp. N941 s 6 1
Bacillus pumilus s 6 1
Bacillus subtilis s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bifidobacterium longum s 6 1
Bacillus pumilus s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium adolescentis s 6 1
Burkholderia cenocepacia s 6 1
Bifidobacterium longum s 6 1
Bacillus pumilus s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bacillus licheniformis LMG 7559 s 6 1
Streptomyces scabiei s 6 1
Moraxella osloensis s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces europaeiscabiei s 6 1
Streptomyces europaeiscabiei s 6 1
Streptomyces sp. 96-12 s 6 1
Streptomyces scabiei s 6 1
Flavobacterium chilense s 6 1
Bacillus velezensis s 6 1
Bifidobacterium longum subsp. longum s 6 1
Bacillus paralicheniformis s 6 1
Eikenella corrodens s 6 1
Eikenella corrodens s 6 1
Eikenella corrodens s 6 1
Eikenella corrodens s 6 1
Eikenella corrodens s 6 1
Eikenella corrodens s 6 1
Bacillus safensis s 6 1
Bacillus safensis s 6 1
Bacillus safensis s 6 1
Lactobacillus salivarius s 6 1
Staphylococcus pseudintermedius s 6 1
Lactobacillus gasseri s 6 1
Bacillus safensis s 6 1
Bacillus pumilus s 6 1
Brachyspira hampsonii s 6 1
Moraxella osloensis s 6 1
Bifidobacterium bifidum s 6 1
Chryseobacterium artocarpi s 6 1
Moorella thermoacetica s 6 1
Neisseria elongata subsp. elongata s 6 1
Flavobacterium chilense s 6 1
Bacillus pumilus s 6 1
Brachyspira hampsonii s 6 1
Bacillus pumilus s 6 1
Bacillus paralicheniformis s 6 1
Paenibacillus odorifer s 6 1
Bacillus safensis s 6 1
Actinomyces oris s 6 1
Fusobacterium nucleatum s 6 1
Bacillus xiamenensis s 6 1
Bacillus safensis s 6 1
Bacillus safensis s 6 1
Actinomyces hordeovulneris s 12 2
Bacillus pumilus s 6 1
Bifidobacterium longum subsp. longum s 6 1
Lactobacillus salivarius s 6 1
Bacillus amyloliquefaciens s 6 1
Bacillus paralicheniformis s 6 1
Flavobacterium columnare s 6 1
Flavobacterium columnare s 12 2
Bacillus safensis s 6 1
Bacillus safensis s 6 1
Moraxella bovis s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Streptomyces scabiei s 6 1
Escherichia coli s 6 1
Moraxella equi s 6 1
Bacillus paralicheniformis s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium longum s 6 1
Bifidobacterium adolescentis s 6 1
Bifidobacterium longum s 6 1
Eikenella corrodens s 6 1
Lactobacillus gasseri s 6 1
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 s 6 1
Bifidobacterium longum NCC2705 s 6 1

*p=pathogen;s=symbiont