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Genomes encoding eukaryotic-like proteins

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PF11468 Aromatic prenyltransferase Orf2

Copy number in non-pathogens:
Mean=0.02 Stddev=0.22

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 4 1
Nocardia anaemiae NBRC 100462 s 8 2
Nocardia yamanashiensis NBRC 100130 s 4 1
Nocardia elegans NBRC 108235 s 4 1
Nocardia mexicana NBRC 108244 s 4 1
Streptomyces acidiscabies s 4 1
Streptomyces acidiscabies s 4 1
Nocardia arthritidis NBRC 100137 s 4 1
Nocardia crassostreae s 4 1
Nocardia inohanensis NBRC 100128 s 4 1
Nocardia kruczakiae NBRC 101016 s 4 1
Nocardia mikamii NBRC 108933 s 4 1
Nocardia niwae NBRC 108934 = DSM 45340 s 4 1
Nocardia araoensis NBRC 100135 s 8 2
Nocardia veterana NBRC 100344 s 4 1
Nocardia aobensis NBRC 100429 s 4 1
Nocardia concava NBRC 100430 s 4 1
Nocardia exalbida NBRC 100660 s 4 1
Nocardia tenerifensis NBRC 101015 s 4 1
Nocardia transvalensis NBRC 15921 s 4 1
Frankia sp. CN3 s 4 1
Nocardia brasiliensis ATCC 700358 p 4 1
Streptomyces acidiscabies s 4 1
Streptomyces atriruber s 13 3
Streptomyces acidiscabies s 8 2
Streptomyces acidiscabies s 4 1
Streptomyces acidiscabies s 4 1
Streptomyces acidiscabies s 4 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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