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Genomes encoding eukaryotic-like proteins

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PF11759 Keratin-associated matrix

Copy number in non-pathogens:
Mean=0.00 Stddev=0.04

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides vulgatus s 27 1
Bacteroides vulgatus s 27 1
Escherichia coli NE1487 s 27 1
Escherichia coli P0298942.15 s 27 1
Escherichia coli 99.0672 s 27 1
Bacteroides dorei CL02T00C15 s 27 1
Bacteroides dorei CL02T12C06 s 27 1
Paraburkholderia phytofirmans PsJN s 27 1
Bacteroides vulgatus ATCC 8482 s 27 1
Escherichia coli 1-176-05_S4_C3 s 27 1
Escherichia coli 1-176-05_S4_C2 s 27 1
Escherichia coli 1-176-05_S4_C1 s 27 1
Burkholderia pseudomallei s 27 1
Burkholderia pseudomallei s 27 1
Rickettsiales bacterium Ac37b s 27 1
Cardiobacterium hominis s 27 1
Cardiobacterium hominis s 27 1
Burkholderia cepacia s 27 1
Burkholderia vietnamiensis s 27 1
Burkholderia vietnamiensis s 27 1
Escherichia coli s 27 1
Acinetobacter pittii s 27 1
Burkholderia pseudomallei s 27 1
Burkholderia pseudomallei s 27 1
Burkholderia pseudomallei s 27 1
Burkholderia pseudomallei s 27 1
Burkholderia cenocepacia s 27 1
Burkholderia cenocepacia s 27 1
Burkholderia cenocepacia s 27 1
Burkholderia pseudomallei s 27 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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