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Genomes encoding eukaryotic-like proteins

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PF11937 Protein of unknown function (DUF3455)

Copy number in non-pathogens:
Mean=0.08 Stddev=0.31

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 s 6 2
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 s 6 2
Achromobacter piechaudii ATCC 43553 s 6 2
Polaromonas sp. CF318 s 12 4
Bradyrhizobium sp. YR681 s 6 2
Pseudomonas fluorescens LMG 5329 s 6 2
Bradyrhizobium sp. WSM3983 s 6 2
Bradyrhizobium elkanii USDA 3259 s 6 2
Burkholderia sp. WSM2232 s 6 2
Bradyrhizobium sp. Ec3.3 s 6 2
Bradyrhizobium elkanii USDA 3254 s 6 2
Bradyrhizobium sp. th.b2 s 6 2
Pseudomonas tolaasii 6264 s 6 2
Burkholderia gladioli 3848s-5 s 6 2
Pseudomonas tolaasii PMS117 s 6 2
Pseudomonas fluorescens NZ052 s 6 2
Burkholderia sp. UYPR1.413 s 9 3
Bradyrhizobium sp. WSM1417 s 6 2
Burkholderia gladioli BSR3 s 6 2
Delftia sp. RIT313 s 6 2
Agrobacterium rhizogenes s 6 2
Delftia acidovorans s 6 2
Burkholderia cepacia s 6 2
Comamonas testosteroni ZNC0007 s 6 2
Delftia sp. ZNC0008 s 6 2
Burkholderia cepacia s 6 2
Pseudomonas putida s 6 2
Achromobacter xylosoxidans s 6 2
Pseudomonas putida s 6 2
Pseudomonas putida s 6 2
Pseudomonas putida s 6 2
Pseudomonas putida s 6 2
Achromobacter xylosoxidans s 6 2
Pseudomonas fluorescens s 6 2
Delftia sp. HK171 s 6 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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