Metamenu

Genomes encoding eukaryotic-like proteins

PF12224 Putative amidoligase enzyme

Copy number in non-pathogens:
Mean=0.08 Stddev=0.33

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Oscillibacter valericigenes Sjm18-20 s 5 2
Ruminococcus sp. JC304 s 5 2
Ruminococcus bicirculans s 12 4
Clostridium perfringens s 5 2
[Ruminococcus] torques s 8 3
[Ruminococcus] torques s 5 2
Flavonifractor plautii s 5 2
Bacteroides vulgatus s 5 2
Blautia obeum s 5 2
[Eubacterium] rectale s 5 2
Clostridioides difficile s 5 2
Clostridioides difficile s 5 2
Clostridioides difficile s 5 2
Clostridioides difficile s 5 2
Tyzzerella nexilis DSM 1787 s 5 2
Roseburia inulinivorans DSM 16841 s 5 2
Ruminococcus albus 7 = DSM 20455 s 8 3
Clostridium orbiscindens 1_3_50AFAA s 5 2
[Clostridium] bolteae WAL-14578 s 8 3
[Clostridium] clostridioforme WAL-7855 s 8 3
Pseudoflavonifractor capillosus ATCC 29799 s 12 4
[Clostridium] bolteae ATCC BAA-613 s 8 3
Dorea longicatena DSM 13814 s 5 2
Flavonifractor plautii ATCC 29863 s 5 2
Ruminococcus torques ATCC 27756 s 5 2
Ruminococcus callidus ATCC 27760 s 15 5
Lachnospiraceae bacterium A4 s 5 2
Clostridium sp. ASF356 s 5 2
Clostridioides difficile P50 s 5 2
Calothrix sp. PCC 7103 s 5 2
Clostridium sp. L2-50 s 8 3
Bacteroides fragilis str. J38-1 s 5 2
Bacteroides fragilis str. Ds-233 s 5 2
Bacteroides fragilis str. DS-166 s 5 2
Bacteroides fragilis str. 20793-3 s 5 2
Bacteroides fragilis str. 3719 A10 s 5 2
Bacteroides fragilis str. 3774 T13 s 5 2
Clostridium perfringens E str. JGS1987 s 12 4
Clostridium perfringens D str. JGS1721 s 8 3
Clostridium perfringens B str. ATCC 3626 s 5 2
Blautia sp. KLE 1732 s 8 3
Oscillibacter sp. KLE 1745 s 5 2
Oscillibacter sp. KLE 1728 s 5 2
Blautia producta ATCC 27340 = DSM 2950 s 12 4
Succinimonas amylolytica DSM 2873 s 8 3
Runella zeae DSM 19591 s 5 2
Blautia producta ATCC 27340 = DSM 2950 s 12 4
Bacteroides sp. 2_2_4 s 5 2
Bacteroides sp. 4_3_47FAA s 5 2
Bacteroides dorei 5_1_36/D4 s 5 2
Erysipelotrichaceae bacterium 21_3 s 5 2
Lachnospiraceae bacterium 1_4_56FAA s 5 2
Lachnospiraceae bacterium 2_1_58FAA s 5 2
Lachnospiraceae bacterium 7_1_58FAA s 5 2
Lachnospiraceae bacterium 3_1_46FAA s 5 2
Subdoligranulum sp. 4_3_54A2FAA s 5 2
Bilophila sp. 4_1_30 s 5 2
[Clostridium] clostridioforme 2_1_49FAA s 5 2
[Clostridium] symbiosum WAL-14163 s 5 2
Bacteroides caccae CL03T12C61 s 8 3
Bacteroides fragilis CL05T12C13 s 5 2
Bacteroides fragilis CL07T00C01 s 5 2
Bacteroides fragilis CL07T12C05 s 5 2
Bacteroides fragilis HMW 610 s 5 2
Bacteroides fragilis HMW 616 s 5 2
Ruminococcus flavefaciens FD-1 s 18 6
Ruminococcus flavefaciens ATCC 19208 s 5 2
Ruminococcus gnavus AGR2154 s 8 3
Ruminococcus flavefaciens AE3010 s 8 3
[Clostridium] bolteae 90B7 s 8 3
[Clostridium] bolteae 90B8 s 8 3
[Clostridium] bolteae 90A9 s 5 2
[Clostridium] bolteae 90A5 s 8 3
[Clostridium] bolteae 90B3 s 5 2
[Clostridium] clostridioforme 90A6 s 8 3
[Clostridium] clostridioforme 90A4 s 8 3
[Clostridium] clostridioforme 90A7 s 5 2
[Clostridium] clostridioforme 90B1 s 8 3
[Clostridium] clostridioforme 90A1 s 8 3
[Clostridium] clostridioforme 90A3 s 8 3
[Clostridium] clostridioforme 90A8 s 5 2
[Clostridium] clostridioforme CM201 s 5 2
Butyricicoccus pullicaecorum 1.2 s 18 6
Acidaminococcus intestini RyC-MR95 s 8 3
Azospirillum brasilense s 5 2
Bacteroides fragilis s 8 3
Ruminococcus albus 7 = DSM 20455 s 8 3
[Clostridium] lactatifermentans DSM 14214 s 15 5
Gemmiger formicilis s 5 2
Butyricicoccus pullicaecorum DSM 23266 s 18 6
Intestinimonas butyriciproducens s 5 2
Ruminococcus flavefaciens s 18 6
Ruminococcus flavefaciens s 12 4
Ruminococcus flavefaciens s 21 7
Ruminococcus flavefaciens 007c s 5 2
Clostridium tyrobutyricum s 5 2
Ruthenibacterium lactatiformans s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides thetaiotaomicron s 5 2
Ruthenibacterium lactatiformans s 5 2
Ruminococcus flavefaciens s 18 6
Ruminococcus flavefaciens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
Clostridium perfringens s 5 2
[Clostridium] clostridioforme s 8 3
Paenibacillus odorifer s 8 3
Bacteroides fragilis s 5 2
Bacteroides thetaiotaomicron s 5 2
Inquilinus limosus s 5 2
Clostridium perfringens s 5 2
Bacteroides dorei s 8 3

*p=pathogen;s=symbiont