Metamenu

Genomes encoding eukaryotic-like proteins

PF12784 PD-(D/E)XK nuclease family transposase

Copy number in non-pathogens:
Mean=0.21 Stddev=1.12

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Lactobacillus gasseri ATCC 33323 = JCM 1131 s 5 6
Bacteroides barnesiae DSM 18169 = JCM 13652 s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Orientia tsutsugamushi str. Ikeda s 14 16
Streptococcus pneumoniae s 10 12
Streptococcus pneumoniae s 7 9
Streptococcus pneumoniae s 12 14
Streptococcus pneumoniae s 5 6
Streptococcus pneumoniae s 9 11
Streptococcus suis s 5 6
Streptococcus suis s 5 6
Streptococcus suis s 4 5
Streptococcus suis s 5 6
Streptococcus suis s 5 6
Wolbachia endosymbiont of Culex quinquefasciatus Pel p 4 5
Streptococcus pneumoniae s 4 5
Holdemania massiliensis AP2 s 6 8
Rickettsia hoogstraalii s 4 5
Flavobacterium branchiophilum FL-15 s 6 7
Bacteroides xylanisolvens SD CC 1b s 5 6
Bacteroides xylanisolvens SD CC 2a s 5 6
Parabacteroides distasonis s 6 7
Streptococcus suis s 5 6
Streptococcus suis s 4 5
Streptococcus suis s 4 5
Paenibacillus riograndensis SBR5 s 5 6
Parabacteroides distasonis s 6 7
[Ruminococcus] torques s 4 5
Roseburia inulinivorans s 4 5
Parabacteroides distasonis s 5 6
Roseburia inulinivorans s 5 6
Bacteroides vulgatus s 5 6
[Clostridium] innocuum s 10 12
Anaerostipes hadrus s 4 5
Faecalicatena contorta s 5 6
[Ruminococcus] torques s 4 5
Parabacteroides distasonis s 5 6
Parabacteroides distasonis s 4 5
Anaerostipes hadrus s 6 7
Ruminococcus sp. AT10 s 6 8
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus cereus s 4 5
Streptococcus pneumoniae s 4 5
Dorea formicigenerans ATCC 27755 s 4 5
Marvinbryantia formatexigens DSM 14469 s 4 5
Bacteroides dorei DSM 17855 s 5 6
[Eubacterium] dolichum DSM 3991 s 4 5
Streptococcus mitis SK564 s 4 5
Streptococcus mitis SK597 s 4 5
Lactobacillus antri DSM 16041 s 6 7
Lactobacillus gasseri JV-V03 s 6 7
Brachyspira murdochii DSM 12563 s 19 22
Lactobacillus gasseri 202-4 s 4 5
Oribacterium sinus F0268 s 5 6
Bacteroides xylanisolvens SD CC 1b s 5 6
Bacteroides xylanisolvens SD CC 2a s 5 6
Blautia hansenii DSM 20583 s 5 6
Prevotella copri DSM 18205 s 8 10
Selenomonas sputigena ATCC 35185 s 6 8
Bacteroides sp. 3_1_13 s 6 8
Parabacteroides sp. D26 s 5 6
Clostridium sp. HGF2 s 13 15
Paraprevotella clara YIT 11840 s 7 9
Paraprevotella xylaniphila YIT 11841 s 4 5
Phascolarctobacterium succinatutens YIT 12067 s 6 7
Lactobacillus oris F0423 s 4 5
Centipeda periodontii DSM 2778 s 17 20
Streptococcus mitis SK569 s 4 5
Streptococcus mitis SK1080 s 7 9
Clostridium sp. SS2/1 s 5 6
[Clostridium] spiroforme DSM 1552 s 4 5
Ruminococcus gnavus ATCC 29149 s 6 7
Bacteroides salanitronis DSM 18170 s 5 6
Selenomonas sputigena ATCC 35185 s 6 8
Treponema brennaborense DSM 12168 s 10 12
Bacillus thuringiensis serovar pakistani str. T13001 s 4 5
Bacillus thuringiensis IBL 4222 s 4 5
Bacillus thuringiensis IBL 200 s 4 5
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 s 14 16
Enterococcus pallens ATCC BAA-351 s 11 13
Selenomonas sp. CM52 s 8 10
Treponema sp. JC4 s 11 13
Brachyspira hampsonii 30446 s 14 17
Ruminococcus gnavus CC55_001C s 6 8
Lachnospiraceae bacterium A4 s 12 14
Lachnospiraceae bacterium M18-1 s 4 5
Lachnospiraceae bacterium A2 s 8 10
Eubacterium plexicaudatum ASF492 s 17 20
Clostridium sp. ASF502 s 6 8
Parabacteroides sp. ASF519 s 10 12
Lactobacillus gasseri K7 s 6 7
Butyricimonas synergistica DSM 23225 s 6 8
[Eubacterium] cellulosolvens 6 s 5 6
Wolbachia pipientis wMelPop s 6 7
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 s 4 5
Lactobacillus antri DSM 16041 s 5 6
Lactobacillus ingluviei DSM 15946 s 6 7
Lactobacillus kalixensis DSM 16043 s 4 5
Lactobacillus oris DSM 4864 s 4 5
Treponema pedis str. T M1 s 9 11
Treponema pedis str. B 683 s 10 12
Treponema pedis isoE1186 s 10 12
Treponema pedis isoM1220 s 8 10
Treponema pedis isoM1224 s 12 14
[Eubacterium] hallii DSM 3353 s 4 5
Bacillus anthracis str. Australia 94 s 4 5
Bacillus anthracis str. Vollum s 4 5
Bacillus anthracis str. Kruger B s 4 5
Bacillus anthracis str. Western North America USA6153 s 4 5
Bacillus anthracis str. CNEVA-9066 s 4 5
Clostridium perfringens E str. JGS1987 s 9 11
Bacillus anthracis str. Tsiankovskii-I s 4 5
Clostridium perfringens D str. JGS1721 s 6 8
Clostridium perfringens B str. ATCC 3626 s 5 6
Anaerostipes hadrus DSM 3319 s 6 7
Catonella morbi ATCC 51271 s 6 7
Brachyspira innocens ATCC 29796 s 22 26
Blautia producta ATCC 27340 = DSM 2950 s 6 7
Parabacteroides gordonii DSM 23371 s 8 10
Bacteroides barnesiae DSM 18169 = JCM 13652 s 5 6
Brachyspira hyodysenteriae ATCC 27164 s 13 15
Blautia producta ATCC 27340 = DSM 2950 s 4 5
Parabacteroides sp. 2_1_7 s 6 7
Bacteroides sp. 4_3_47FAA s 4 5
Bacteroides sp. 9_1_42FAA s 5 6
Bacteroides sp. D1 s 5 6
Bacteroides dorei 5_1_36/D4 s 4 5
Coprobacillus sp. D6 s 5 6
Bacteroides sp. 2_1_22 s 5 6
Bacteroides sp. 3_1_33FAA s 5 6
Parabacteroides sp. D13 s 6 8
Parabacteroides sp. 20_3 s 6 7
Bacteroides sp. 3_1_40A s 5 6
Erysipelotrichaceae bacterium 21_3 s 12 14
Erysipelotrichaceae bacterium 3_1_53 s 13 15
Erysipelotrichaceae bacterium 6_1_45 s 13 15
Lachnospiraceae bacterium 2_1_58FAA s 6 8
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 6 7
Lachnospiraceae bacterium 5_1_63FAA s 4 5
Lachnospiraceae bacterium 6_1_63FAA s 5 6
Bacteroides sp. 3_1_19 s 5 6
Bacteroides sp. D22 s 6 7
Erysipelotrichaceae bacterium 2_2_44A s 11 13
Lactobacillus gasseri SJ-9E-US s 5 6
Lactobacillus gasseri SV-16A-US s 5 6
Lachnospiraceae bacterium 2_1_46FAA s 4 5
Hungatella hathewayi WAL-18680 s 4 5
Dorea formicigenerans 4_6_53AFAA s 8 10
Peptoanaerobacter stomatis s 4 5
Bacteroides dorei CL02T00C15 s 4 5
Bacteroides dorei CL02T12C06 s 4 5
Bacteroides dorei CL03T12C01 s 4 5
Bacteroides vulgatus CL09T03C04 s 4 5
Bacteroides xylanisolvens CL03T12C04 s 4 5
Parabacteroides distasonis CL03T12C09 s 5 6
Parabacteroides distasonis CL09T03C24 s 4 5
Parabacteroides goldsteinii CL02T12C30 s 6 8
Parabacteroides johnsonii CL02T12C29 s 4 5
Rickettsia honei RB s 4 5
Lactobacillus gasseri 2016 s 5 6
Bacillus anthracis str. A0488 s 4 5
Bacillus anthracis str. A0465 s 4 5
Bacillus anthracis str. A0442 s 4 5
Bacillus anthracis str. A0193 s 4 5
Bacillus anthracis str. Heroin Ba4599 s 4 5
Streptococcus mitis 21/39 s 4 5
Rickettsia conorii subsp. indica ITTR s 4 5
Lactobacillus gasseri CECT 5714 s 6 7
Paenibacillus riograndensis SBR5 s 5 6
Sphingobacterium paucimobilis HER1398 s 5 6
Wolbachia endosymbiont of Culex quinquefasciatus JHB p 6 7
Moraxella macacae 0408225 s 5 6
Brachyspira alvinipulli ATCC 51933 s 7 9
Parabacteroides sp. D25 s 6 7
Treponema denticola AL-2 s 24 28
Treponema denticola ASLM s 15 18
Treponema denticola ATCC 33520 s 22 26
Treponema denticola ATCC 33521 s 23 27
Treponema denticola ATCC 35404 s 22 26
Treponema denticola H-22 s 26 30
Treponema denticola H1-T s 22 25
Treponema denticola MYR-T s 22 25
Treponema denticola OTK s 23 27
Treponema denticola SP33 s 25 29
Treponema denticola SP37 s 25 29
Treponema denticola US-Trep s 18 21
[Clostridium] innocuum 2959 s 11 13
Treponema denticola SP23 s 25 29
Treponema denticola SP32 s 27 31
Treponema denticola SP44 s 25 29
Enterococcus pallens ATCC BAA-351 s 11 13
Treponema vincentii F0403 s 5 6
Treponema socranskii subsp. paredis ATCC 35535 s 5 6
Treponema medium ATCC 700293 s 4 5
Treponema maltophilum ATCC 51939 s 6 8
Fibrobacter succinogenes subsp. succinogenes S85 s 8 10
Lactobacillus gasseri ATCC 33323 = JCM 1131 s 5 6
Brachyspira pilosicoli B2904 s 4 5
Brachyspira hyodysenteriae WA1 s 14 17
Rickettsia conorii str. Malish 7 p 4 5
Rickettsia bellii RML369-C p 6 7
Rickettsia slovaca 13-B p 5 6
Rickettsia africae ESF-5 p 4 5
Rickettsia massiliae MTU5 p 4 5
Wolbachia sp. wRi p 14 17
Rickettsia rickettsii str. 'Sheila Smith' p 5 6
Bacillus anthracis str. 'Ames Ancestor' s 4 5
Treponema primitia ZAS-2 s 5 6
Treponema azotonutricium ZAS-9 s 6 8
Bacillus anthracis str. H9401 s 4 5
Flavobacterium columnare ATCC 49512 s 6 7
Brachyspira intermedia PWS/A s 6 8
Rickettsia rickettsii str. Iowa p 5 6
Bacillus anthracis str. CDC 684 s 4 5
Bacillus anthracis str. A0248 s 4 5
Fibrobacter succinogenes subsp. succinogenes S85 s 8 10
Rickettsia peacockii str. Rustic p 4 5
Rickettsia bellii OSU 85-389 p 4 5
Wolbachia endosymbiont of Drosophila simulans wHa s 9 11
Bacteroides vulgatus ATCC 8482 s 5 6
Parabacteroides distasonis ATCC 8503 s 6 7
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis str. Vollum s 4 5
Bacillus anthracis s 4 5
Bacillus mycoides s 4 5
Butyrivibrio sp. AE3003 s 4 5
Butyrivibrio sp. AE2005 s 5 6
Selenomonas ruminantium AC2024 s 4 5
Lachnospiraceae bacterium AC3007 s 4 5
Butyrivibrio sp. LB2008 s 11 13
Anaerovibrio lipolyticus LB2005 s 4 5
Ruminococcus sp. HUN007 s 6 7
Treponema porcinum s 6 8
Clostridium grantii DSM 8605 s 7 9
Lactobacillus ingluviei s 5 6
Streptococcus mitis s 4 5
Streptococcus mitis s 4 5
Streptococcus mitis s 4 5
Streptococcus mitis s 4 5
Bacillus anthracis s 4 5
Lachnospiraceae bacterium MC2017 s 4 5
Selenomonas ruminantium AB3002 s 6 7
Blautia schinkii DSM 10518 s 7 9
Bacillus anthracis s 4 5
Wolbachia pipientis s 4 5
Butyrivibrio hungatei s 5 6
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
[Clostridium] innocuum s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus cereus s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Streptococcus pseudopneumoniae s 4 5
Lactobacillus gasseri s 5 6
Lactobacillus gasseri s 5 6
Lactobacillus gasseri s 6 7
Lactobacillus gasseri s 5 6
Lactobacillus gasseri s 5 6
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus cereus s 5 6
Anaerostipes hadrus s 7 9
Parabacteroides sp. HGS0025 s 11 13
Parabacteroides gordonii MS-1 s 7 9
Parabacteroides goldsteinii DSM 19448 = WAL 12034 s 10 12
Wolbachia endosymbiont of Drosophila incompta s 7 9
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus thuringiensis s 5 6
Bacteroides dorei CL03T12C01 s 4 5
Bacillus megaterium s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Clostridium botulinum s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 5 6
Bacillus cereus s 6 8
Bacillus thuringiensis s 4 5
Bacillus thuringiensis s 5 6
[Clostridium] innocuum s 9 11
Bacteroides caecimuris s 13 15
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Selenomonas sp. oral taxon 126 s 9 11
Paenibacillus jilunlii s 4 5
Bacillus cereus s 5 6
Bacteroides vulgatus s 6 7
Bacillus mycoides s 4 5
Streptococcus mitis s 10 12
Flavobacterium columnare s 9 11
Bacillus anthracis s 4 5
Bacteroides xylanisolvens s 5 6
Flavobacterium columnare s 11 13
Bacteroides caecimuris s 15 18
Ruminiclostridium sp. KB18 s 5 6
Erysipelotrichaceae bacterium I46 s 11 13
Flavobacterium columnare s 5 6
Bacillus anthracis s 4 5
Brachyspira hyodysenteriae ATCC 27164 s 13 15
Lactobacillus gasseri s 4 5
Brachyspira hampsonii s 16 19
Brachyspira hampsonii s 14 16
Paenibacillus jilunlii s 4 5
Bacteroides xylanisolvens s 4 5
[Clostridium] innocuum s 11 13
Bacillus cereus s 4 5
Eisenbergiella tayi s 9 11
Eisenbergiella tayi s 6 8
Eisenbergiella tayi s 6 8
Eisenbergiella tayi s 8 10
Eisenbergiella tayi s 7 9
Eisenbergiella tayi s 6 8
Eisenbergiella tayi s 6 8
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Bacillus anthracis s 4 5
Brachyspira hampsonii s 11 13
Bacillus cereus s 11 13
Bacillus anthracis s 4 5
Bacillus thuringiensis s 4 5
Eisenbergiella tayi s 8 10
Bacillus cereus s 6 7
Rickettsia rickettsii s 5 6
Rickettsia rickettsii s 5 6
Flavobacterium columnare s 5 6
Bacillus anthracis s 4 5
Bacillus anthracis s 6 8
Bacillus cereus s 6 7
Rickettsia raoultii s 4 5
Clostridium perfringens s 4 5
Flavobacterium columnare s 7 9
Bacteroides xylanisolvens s 4 5
Bacteroides xylanisolvens s 5 6
Bacteroides dorei s 4 5
Parabacteroides distasonis s 4 5
Bacteroides dorei s 4 5
Lactobacillus gasseri s 6 7
Treponema denticola ATCC 35405 s 23 27

*p=pathogen;s=symbiont