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Genomes encoding eukaryotic-like proteins

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PF12893 Putative lumazine-binding

Copy number in non-pathogens:
Mean=0.21 Stddev=0.65

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Chryseobacterium indologenes NBRC 14944 s 5 4
Pseudomonas fluorescens SBW25 s 5 4
Chryseobacterium indologenes s 4 3
Flectobacillus major DSM 103 s 4 3
Pseudomonas sp. GM41(2012) s 8 6
Pseudomonas sp. GM48 s 7 5
Pseudoalteromonas luteoviolacea 2ta16 s 5 4
Bradyrhizobium japonicum USDA 123 s 4 3
Bradyrhizobium elkanii USDA 3254 s 4 3
Flavobacterium denitrificans DSM 15936 s 4 3
Sphingobacterium paucimobilis HER1398 s 4 3
Pedobacter borealis DSM 19626 s 4 3
Collimonas fungivorans Ter331 s 4 3
Pseudomonas sp. RIT357 s 5 4
Sphingobacterium thalpophilum DSM 11723 s 16 11
Rhizobium leguminosarum bv. trifolii CB782 s 4 3
Lysobacter capsici s 7 5
Acinetobacter calcoaceticus s 4 3
Pseudomonas fluorescens s 5 4
Pseudomonas fluorescens s 4 3
Pseudomonas fluorescens s 5 4
Burkholderia cepacia s 4 3
Burkholderia cepacia s 4 3
Chryseobacterium indologenes s 4 3
Lysobacter capsici s 5 4
Pseudomonas trivialis s 4 3
Tardiphaga robiniae s 4 3
Chryseobacterium indologenes s 4 3
Bradyrhizobium japonicum s 4 3
Bradyrhizobium japonicum s 4 3
Chryseobacterium indologenes s 5 4
Sphingobacterium sp. B29 s 22 15
Chryseobacterium sp. T16E-39 s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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