Metamenu

Genomes encoding eukaryotic-like proteins

PF12904 Putative collagen-binding domain of a collagenase

Copy number in non-pathogens:
Mean=0.05 Stddev=0.29

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 6 2
Haloferula sp. BvORR071 s 6 2
Bacteroides xylanisolvens SD CC 1b s 6 2
Zobellia galactanivorans s 6 2
Bacteroides vulgatus s 6 2
Bacteroides vulgatus s 6 2
Bacteroides ovatus s 6 2
Bacteroides vulgatus s 6 2
Bacteroides dorei DSM 17855 s 6 2
Paenibacillus sp. JDR-2 s 6 2
Bacteroides xylanisolvens SD CC 1b s 6 2
Bacteroides vulgatus PC510 s 6 2
Bacteroides ovatus ATCC 8483 s 6 2
Cyclobacterium marinum DSM 745 s 10 3
Bacteroides cellulosilyticus WH2 s 6 2
Runella zeae DSM 19591 s 10 3
Dyadobacter beijingensis DSM 21582 s 10 3
Bacteroides sp. 4_3_47FAA s 6 2
Bacteroides sp. 9_1_42FAA s 6 2
Bacteroides sp. D1 s 6 2
Bacteroides sp. D2 s 6 2
Bacteroides dorei 5_1_36/D4 s 6 2
Bacteroides sp. 2_1_22 s 6 2
Bacteroides sp. 3_1_33FAA s 6 2
Bacteroides ovatus 3_8_47FAA s 6 2
Bacteroides sp. D22 s 6 2
Bacteroides sp. 1_1_30 s 6 2
Bacteroides dorei CL02T00C15 s 6 2
Bacteroides dorei CL02T12C06 s 6 2
Bacteroides dorei CL03T12C01 s 6 2
Bacteroides ovatus CL02T12C04 s 6 2
Bacteroides ovatus CL03T12C18 s 6 2
Bacteroides salyersiae CL02T12C01 s 6 2
Bacteroides vulgatus CL09T03C04 s 6 2
Aquimarina agarivorans s 6 2
Aquimarina agarilytica ZC1 s 10 3
Pseudonocardia sp. P1 s 6 2
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 6 2
Dyadobacter fermentans DSM 18053 s 10 3
Bacteroides vulgatus ATCC 8482 s 6 2
Alteromonadaceae bacterium Bs31 s 6 2
Bacteroides ovatus s 6 2
Bacteroides dorei CL03T12C01 s 6 2
Bacteroides ovatus s 6 2
Bacteroides vulgatus s 6 2
Opitutaceae bacterium TSB47 s 6 2
Bacteroides vulgatus s 6 2
Bacteroides xylanisolvens s 6 2
Bacteroides ovatus s 6 2
Bacteroides xylanisolvens s 6 2
Bacteroides ovatus s 6 2
Zobellia galactanivorans s 6 2
Bacteroides dorei s 6 2
Bacteroides ovatus s 6 2
Bacteroides dorei s 6 2

*p=pathogen;s=symbiont