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Genomes encoding eukaryotic-like proteins

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PF13363 Beta-galactosidase, domain 3

Copy number in non-pathogens:
Mean=0.04 Stddev=0.23

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptomyces turgidiscabies s 8 2
Austwickia chelonae NBRC 105200 s 4 1
Actinomadura latina NBRC 106108 s 4 1
Kutzneria sp. 744 s 4 1
Sphingobium sp. AP49 s 4 1
Streptomyces turgidiscabies Car8 s 8 2
Actinomyces graevenitzii F0530 s 4 1
Niveispirillum irakense DSM 11586 s 4 1
Streptomyces sp. FxanaD5 s 4 1
Massilia timonae CCUG 45783 s 4 1
Sphingobium yanoikuyae ATCC 51230 s 4 1
Streptomyces sp. TOR3209 s 4 1
Streptomyces sp. HGB0020 s 8 2
Actinomadura madurae LIID-AJ290 s 4 1
Actinoplanes subtropicus s 12 3
Streptomyces sp. NRRL F-5555 s 4 1
Streptomyces sp. NRRL F-5527 s 4 1
Luteibacter rhizovicinus DSM 16549 s 4 1
Streptomyces pluripotens s 4 1
Streptomyces pluripotens s 4 1
Sphingomonas taxi s 4 1
Streptomyces europaeiscabiei s 4 1
Sphingomonas panacis s 4 1
Streptomyces europaeiscabiei s 4 1
Streptomyces europaeiscabiei s 4 1
Sphingobium sp. RAC03 s 4 1
Streptomyces sp. SAT1 s 4 1
Streptomyces pactum s 4 1
Actinomyces hordeovulneris s 4 1
Streptomyces rhizosphaericus s 4 1
Amycolatopsis kentuckyensis s 4 1
Amycolatopsis lexingtonensis s 8 2
Amycolatopsis pretoriensis s 4 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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