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Genomes encoding eukaryotic-like proteins

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PF13507 CobB/CobQ-like glutamine amidotransferase domain

Copy number in non-pathogens:
Mean=0.96 Stddev=0.22

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Cronobacter turicensis 564 s 4 2
Listeria monocytogenes s 4 2
Enterobacter cloacae s 4 2
Cardiobacterium hominis s 4 2
Bifidobacterium longum s 4 2
Eubacterium saphenum ATCC 49989 s 4 2
Dialister microaerophilus UPII 345-E s 9 3
Aerococcus viridans ATCC 11563 = CCUG 4311 s 4 2
Parvimonas sp. oral taxon 393 str. F0440 s 4 2
Dialister micraerophilus DSM 19965 s 4 2
Ignatzschineria larvae DSM 13226 s 4 2
Francisella cf. tularensis subsp. novicida 3523 s 9 3
Lentzea albidocapillata s 4 2
Butyrivibrio sp. AE2032 s 4 2
Tissierellia bacterium S5-A11 s 4 2
Terrisporobacter glycolicus s 4 2
Alistipes sp. ZOR0009 s 4 2
Enterococcus faecalis s 4 2
Haemophilus parainfluenzae s 4 2
Haemophilus parainfluenzae s 4 2
Aerococcus viridans s 4 2
Lactobacillus helveticus s 4 2
Bacillus subtilis s 4 2
Mycobacterium scrofulaceum s 4 2
Lentzea albidocapillata s 4 2
Mycobacterium kansasii s 4 2
Klebsiella pneumoniae s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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