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Genomes encoding eukaryotic-like proteins

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PF14124 Domain of unknown function (DUF4291)

Copy number in non-pathogens:
Mean=0.11 Stddev=0.37

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Acinetobacter bereziniae s 5 2
Streptomyces scabiei s 5 2
Haloferula sp. BvORR071 s 5 2
Actinosynnema mirum DSM 43827 s 5 2
Fusobacterium nucleatum 13_3C s 5 2
Acinetobacter bereziniae LMG 1003 = CIP 70.12 s 5 2
Leptotrichia sp. oral taxon 215 str. W9775 s 5 2
Pseudomonas fuscovaginae CB98818 s 5 2
Salinispora pacifica CNT001 s 5 2
Actinoplanes subtropicus s 5 2
Streptomyces scabiei s 5 2
Streptomyces scabiei s 5 2
Streptomyces acidiscabies s 5 2
Chryseobacterium indologenes s 5 2
Streptomyces scabiei s 5 2
Streptomyces europaeiscabiei s 5 2
Streptomyces scabiei s 7 3
Streptomyces scabiei s 5 2
Streptomyces scabiei s 5 2
Streptomyces scabiei s 5 2
Streptomyces scabiei s 10 4
Streptomyces scabiei s 5 2
Streptomyces europaeiscabiei s 5 2
Streptomyces europaeiscabiei s 5 2
Streptomyces sp. 96-12 s 5 2
Streptomyces pactum s 5 2
Streptomyces scabiei s 5 2
Streptomyces scabiei s 5 2
Streptomyces scabiei s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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