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Genomes encoding eukaryotic-like proteins

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PF14592 Chondroitinase B

Copy number in non-pathogens:
Mean=0.09 Stddev=0.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraglaciecola mesophila KMM 241 s 4 2
Verrucomicrobium sp. BvORR106 s 4 2
Vibrio halioticoli NBRC 102217 s 12 5
Zobellia galactanivorans s 4 2
Bacteroides intestinalis DSM 17393 s 7 3
Bacteroides clarus YIT 12056 s 4 2
Cellulophaga algicola DSM 14237 s 4 2
Paenibacillus sp. HGF7 s 4 2
Caulobacter sp. AP07 s 4 2
Cellulophaga baltica NN016038 s 4 2
Actinopolymorpha alba DSM 45243 s 4 2
Ferrimonas senticii DSM 18821 s 4 2
Paenibacillus sp. HGH0039 s 4 2
Pedobacter glucosidilyticus s 7 3
Flaviramulus ichthyoenteri Th78 s 4 2
Microbacterium azadirachtae s 4 2
Polaribacter vadi s 7 3
Polaribacter reichenbachii s 7 3
Maribacter ulvicola s 4 2
Bacteroides clarus YIT 12056 s 4 2
Polaribacter vadi s 7 3
Paenibacillus odorifer s 4 2
Paenibacillus odorifer s 4 2
Polaribacter sp. BM10 s 4 2
Polaribacter reichenbachii s 7 3
Lentzea kentuckyensis s 7 3
Zobellia galactanivorans s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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