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Genomes encoding eukaryotic-like proteins

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PF16114 ATP citrate lyase citrate-binding

Copy number in non-pathogens:
Mean=0.02 Stddev=0.13

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 7 1
Leptospirillum ferrooxidans C2-3 s 7 1
Sinorhizobium fredii HH103 s 7 1
Brevibacillus massiliensis s 7 1
Burkholderia turbans s 7 1
Methylobacterium nodulans ORS 2060 s 7 1
Burkholderia sp. BT03 s 7 1
Rhizobium giardinii bv. giardinii H152 s 7 1
Methylobacterium sp. WSM2598 s 7 1
Microvirga lotononidis s 7 1
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 7 1
Paraburkholderia sprentiae WSM5005 s 7 1
Paraburkholderia dilworthii s 15 2
Burkholderia sp. WSM4176 s 23 3
Burkholderia sp. JPY251 s 7 1
Bacillus sp. 2_A_57_CT2 s 7 1
Sinorhizobium fredii CCBAU 45436 s 7 1
endosymbiont of Tevnia jerichonana (vent Tica) s 7 1
endosymbiont of Riftia pachyptila (vent Ph05) s 7 1
Burkholderia sp. UYPR1.413 s 7 1
Paraburkholderia phymatum STM815 s 7 1
Nautilia profundicola AmH s 7 1
Sulfurovum riftiae s 7 1
Acinetobacter baumannii s 7 1
Ensifer shofinae s 7 1
Paraburkholderia sprentiae WSM5005 s 7 1
Burkholderia sp. BT03 s 7 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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