Metamenu

Effective results for Collimonas fungivorans Ter331 (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 24 proteins (0 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1005048.CFU_1541(PF08881)(ER); ER
1005048.CFU_2230(PF03797)mitochondrial
1005048.CFU_0871+(ER)
1005048.CFU_4208+ER
1005048.CFU_1137+ER
1005048.CFU_0261+ER
1005048.CFU_3476+ER
1005048.CFU_4307(PF03797)mitochondrial
1005048.CFU_2804+ER
1005048.CFU_0663+(mitochondrial)
1005048.CFU_0664+(ER)
1005048.CFU_0407+(mitochondrial)
1005048.CFU_3304(PF14307)mitochondrial
1005048.CFU_3300(PF14307)(ER)
1005048.CFU_3695+mitochondrial
1005048.CFU_2658(PF03797)ER
1005048.CFU_1690(PF03797)mitochondrial
1005048.CFU_2479(PF03797)(ER)
1005048.CFU_2716+mitochondrial
1005048.CFU_3422+mitochondrial; (mitochondrial)
1005048.CFU_0318+mitochondrial
1005048.CFU_0425+(mitochondrial)
1005048.CFU_1357+mitochondrial; (mitochondrial)
1005048.CFU_3531+(mitochondrial)
1005048.CFU_3150+ER
1005048.CFU_3141+ER
1005048.CFU_3602+ER
1005048.CFU_3761+(mitochondrial)
1005048.CFU_3167+ER
1005048.CFU_0426+(mitochondrial)
1005048.CFU_1190(PF13436)ER
1005048.CFU_0185+ER
1005048.CFU_1278(PF03797)ER
1005048.CFU_4362+plastid
1005048.CFU_1783(PF13621)(mitochondrial)
1005048.CFU_3276+(plastid)
1005048.CFU_4335+(mitochondrial)
1005048.CFU_0635+(mitochondrial)
1005048.CFU_2599+(mitochondrial)
1005048.CFU_0577+plastid
1005048.CFU_0814+(mitochondrial)
1005048.CFU_2973(PF13906)(ER); not used
1005048.CFU_2173+
1005048.CFU_4132+
1005048.CFU_1332+
1005048.CFU_2772+
1005048.CFU_0446+
1005048.CFU_2347+
1005048.CFU_4105+
1005048.CFU_1879+
1005048.CFU_4217+
1005048.CFU_3658(PF05637)
1005048.CFU_1505(PF01409)
1005048.CFU_1506(PF01409)
1005048.CFU_1252+
1005048.CFU_3248(PF13621)
1005048.CFU_2323(PF03797)
1005048.CFU_0670+
1005048.CFU_1236+
1005048.CFU_0894+
1005048.CFU_2806+
1005048.CFU_0796+
1005048.CFU_3044+
1005048.CFU_0206+
1005048.CFU_3302(PF14307)
1005048.CFU_2656+
1005048.CFU_2499+
1005048.CFU_0503+
1005048.CFU_1329+
1005048.CFU_3192+
1005048.CFU_3202(PF03797)
1005048.CFU_4082+
1005048.CFU_2108+
1005048.CFU_3188(PF13621)
1005048.CFU_0986(PF03797)
1005048.CFU_3727+
1005048.CFU_1743+
1005048.CFU_2572+
1005048.CFU_0755+
1005048.CFU_2448+
1005048.CFU_1801+
1005048.CFU_3233+
1005048.CFU_0546+
1005048.CFU_1360(PF03797)
1005048.CFU_4046+
1005048.CFU_0397+
1005048.CFU_2140+
1005048.CFU_4393+
1005048.CFU_4330+
1005048.CFU_3385+
1005048.CFU_2702(PF03797)
1005048.CFU_0005+
1005048.CFU_1530+
1005048.CFU_1288+
1005048.CFU_2409+
1005048.CFU_0829+
1005048.CFU_0929+
1005048.CFU_3294(PF13621)
1005048.CFU_1070+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.875 (15/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================