Effective results for Flavobacterium columnare ATCC 49512 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 57 proteins (8 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1041826.FCOL_07985				(PF00431)	ER
1041826.FCOL_03605				PF05572	(ER)
1041826.FCOL_06695				PF05572	ER
1041826.FCOL_00535				(PF13431)	ER
1041826.FCOL_00950				(PF03162)	ER
1041826.FCOL_11270				(PF00161)	ER
1041826.FCOL_08260				(PF02884)	ER
1041826.FCOL_09485				(PF13431)	ER; (ER)
1041826.FCOL_03555				(PF12256)	ER
1041826.FCOL_11280				PF05572	ER
1041826.FCOL_07755				PF05572	ER
1041826.FCOL_12715				PF05572	ER
1041826.FCOL_05500				(PF02884)	ER
1041826.FCOL_10745				PF05572	ER
1041826.FCOL_06375				(PF01609)	(mitochondrial)
1041826.FCOL_00435				(PF13906)	(mitochondrial)
1041826.FCOL_06600				PF05572	ER
1041826.FCOL_10920				(PF12256)	ER
1041826.FCOL_10090				PF05572	ER
1041826.FCOL_05970				(PF01609)	(mitochondrial)
1041826.FCOL_10225				(PF02128)	ER
1041826.FCOL_02230				(PF01902)	(mitochondrial)
1041826.FCOL_05565				(PF01610)
1041826.FCOL_11425				(PF01610)
1041826.FCOL_09850				(PF16804)
1041826.FCOL_05660				(PF01609)
1041826.FCOL_04685				(PF04493)
1041826.FCOL_04680				(PF04493)
1041826.FCOL_05230				(PF01609)
1041826.FCOL_05065				(PF01902)
1041826.FCOL_10805				(PF01609)
1041826.FCOL_02955				(PF01609)
1041826.FCOL_08035				(PF01610)
1041826.FCOL_08030				(PF01610)
1041826.FCOL_03435				(PF02128)
1041826.FCOL_08205				(PF05686)
1041826.FCOL_06355				(PF01609)
1041826.FCOL_07935				(PF01610)
1041826.FCOL_00740				(PF07766)
1041826.FCOL_08300				(PF01610)
1041826.FCOL_09780				(PF09994)
1041826.FCOL_00005				(PF01609)
1041826.FCOL_07905				(PF09994)
1041826.FCOL_08555				(PF01609)
1041826.FCOL_09190				(PF01609)
1041826.FCOL_03675				(PF01609)
1041826.FCOL_08375				(PF07701)
1041826.FCOL_12825				(PF09994)
1041826.FCOL_12485				(PF01609)
1041826.FCOL_04955				(PF01609)
1041826.FCOL_08340				(PF01609)
1041826.FCOL_12945				(PF15891)
1041826.FCOL_04410				(PF01610)
1041826.FCOL_04415				(PF01610)
1041826.FCOL_05940				(PF01609)
1041826.FCOL_11400				(PF01609)
1041826.FCOL_11950				(PF01609)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================