Metamenu

Effective results for Brachyspira intermedia PWS/A (eggnog40)

Summary

Number of putative secreted proteins: 237
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 237 proteins (82 high, 155 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1045858.Bint_1929PF13606 PF13857 PF12796 PF00023ER
1045858.Bint_0997PF13637 PF13857 PF12796ER
1045858.Bint_1885PF13637 PF13857 PF12796ER
1045858.Bint_1894PF13606 PF13637 PF12796ER
1045858.Bint_2089PF12796 PF00023ER
1045858.Bint_1994PF12895 (PF13181)ER
1045858.Bint_1291PF12796 PF00023ER
1045858.Bint_2576(PF13174) (PF13181)ER
1045858.Bint_1060PF13637 PF12796ER
1045858.Bint_2214PF13637 PF12796ER
1045858.Bint_2831PF13857 PF12796ER
1045858.Bint_1222PF13637 PF12796ER
1045858.Bint_2670PF13606 PF12796ER
1045858.Bint_2481PF13606 PF13637ER
1045858.Bint_2669PF13606 PF12796ER
1045858.Bint_0753(PF00515) (PF13174) (PF13181) (PF07719)
1045858.Bint_1218PF13606 PF12796ER
1045858.Bint_0427PF12796 PF00023ER
1045858.Bint_1480PF13637 PF12796ER
1045858.Bint_0995PF13637 PF12796ER
1045858.Bint_1179PF13637 PF12796ER
1045858.Bint_1827(PF00515) (PF07719) (PF13181) PF12895
1045858.Bint_1768PF12796 PF00023ER
1045858.Bint_2152PF13606 PF12796ER
1045858.Bint_2153PF13857 PF12796ER
1045858.Bint_2894(PF02743)mitochondrial
1045858.Bint_2893(PF02743)ER
1045858.Bint_2890(PF04471)ER
1045858.Bint_2388(PF13306)ER
1045858.Bint_2387(PF13306)ER
1045858.Bint_2760(PF07719) (PF13181) (PF00515)
1045858.Bint_0145(PF02743)ER
1045858.Bint_2426(PF02915)ER
1045858.Bint_2889(PF04471)ER
1045858.Bint_2372(PF02743)ER
1045858.Bint_2373(PF02743)ER
1045858.Bint_2087(PF03724)ER
1045858.Bint_2088PF12796ER
1045858.Bint_0550(PF02743)ER
1045858.Bint_1738(PF13306)ER
1045858.Bint_1737(PF02743)(ER)
1045858.Bint_0151(PF00188)ER
1045858.Bint_0023(PF13181)ER
1045858.Bint_1041(PF02915)ER
1045858.Bint_2092PF12796ER
1045858.Bint_1720(PF00188)ER
1045858.Bint_0834(PF00188)ER
1045858.Bint_0239(PF07719) (PF13181) (PF00515)
1045858.Bint_0905(PF13181)(mitochondrial)
1045858.Bint_1479PF12796ER
1045858.Bint_1476(PF02096)ER
1045858.Bint_2404PF12796ER
1045858.Bint_1669(PF05154)ER
1045858.Bint_1268(PF02743)ER
1045858.Bint_1267(PF02743)ER
1045858.Bint_1064(PF05154)ER
1045858.Bint_1082PF12796ER
1045858.Bint_1089(PF00188)ER
1045858.Bint_0215(PF02743)ER
1045858.Bint_2513PF13637 PF12796 PF00023
1045858.Bint_2020(PF13306)ER
1045858.Bint_2021(PF13306)ER
1045858.Bint_0686(PF00209)(ER)
1045858.Bint_0681(PF13174)ER
1045858.Bint_0207(PF07719) (PF13181) (PF00515)
1045858.Bint_0842(PF13174)ER
1045858.Bint_1795(PF13181)ER
1045858.Bint_1424(PF02743)ER
1045858.Bint_0476(PF02743)ER
1045858.Bint_0270(PF01554)ER
1045858.Bint_0309(PF02096)ER
1045858.Bint_0652PF12796ER
1045858.Bint_0876(PF13181)ER
1045858.Bint_0891PF12895 (PF13181) (PF07719)
1045858.Bint_1329(PF03724)ER
1045858.Bint_2224PF12796ER
1045858.Bint_2007(PF02743)ER
1045858.Bint_1247(PF13174)ER
1045858.Bint_1244(PF02096)ER
1045858.Bint_1139(PF01554)ER
1045858.Bint_2671PF12796ER
1045858.Bint_0259(PF01554)ER
1045858.Bint_0521(PF13181)(ER)
1045858.Bint_0256(PF02743)(ER); (mitochondrial)
1045858.Bint_0638(PF05154)ER
1045858.Bint_0329(PF00515) (PF13174) (PF13181)
1045858.Bint_0749(PF13306)ER
1045858.Bint_0748(PF13306)ER
1045858.Bint_2480PF12796ER
1045858.Bint_2482PF12796ER
1045858.Bint_2483PF12796ER
1045858.Bint_1595PF12796ER
1045858.Bint_1202(PF13181)ER
1045858.Bint_0754(PF00515) (PF13181)(plastid)
1045858.Bint_2875(PF01554)ER
1045858.Bint_2474(PF02743)(ER)
1045858.Bint_2619(PF02096)ER
1045858.Bint_0432(PF13429) PF12895 (PF13181)
1045858.Bint_0185(PF02743)ER
1045858.Bint_1109(PF00188)ER
1045858.Bint_0967(PF03724)ER
1045858.Bint_1562(PF02743)ER
1045858.Bint_1569(PF02743)(mitochondrial)
1045858.Bint_2043(PF02743)ER
1045858.Bint_1481PF12796ER
1045858.Bint_2149PF12796ER
1045858.Bint_0561(PF13181)ER
1045858.Bint_0569(PF02743)ER
1045858.Bint_0361(PF00188)(mitochondrial)
1045858.Bint_0365(PF04471)ER
1045858.Bint_0389(PF00209)(ER)
1045858.Bint_0704(PF01554)ER
1045858.Bint_1017(PF01501)(mitochondrial)
1045858.Bint_1387(PF02743)(ER)
1045858.Bint_1949(PF02743)ER
1045858.Bint_2150PF12796ER
1045858.Bint_0658PF12796ER
1045858.Bint_0170(PF02743)ER
1045858.Bint_1843(PF00515) (PF13181)
1045858.Bint_1456(PF04422) (PF04432)
1045858.Bint_1457(PF04422) (PF04432)
1045858.Bint_1731(PF00515) (PF13181)
1045858.Bint_1191PF13606 PF12796
1045858.Bint_1999(PF00515) (PF13181)
1045858.Bint_2417(PF00515) (PF13181)
1045858.Bint_1988(PF00209)(ER)
1045858.Bint_1063(PF00515) (PF13181)
1045858.Bint_2690PF12895 (PF13181)
1045858.Bint_1883(PF01554)(ER)
1045858.Bint_1313(PF00188)(ER)
1045858.Bint_0219(PF01554)(ER)
1045858.Bint_1896PF13606 PF12796
1045858.Bint_0328(PF13174) (PF13181)
1045858.Bint_0326(PF13174) (PF13181)
1045858.Bint_1125(PF00515) (PF13181)
1045858.Bint_0752(PF00515) (PF13181)
1045858.Bint_1578PF12796 PF00023
1045858.Bint_2904(PF07719) (PF00515)
1045858.Bint_0181(PF07719) (PF00515)
1045858.Bint_2046(PF02743)(mitochondrial)
1045858.Bint_1483(PF13174) (PF13181)
1045858.Bint_1828(PF00515) (PF13181)
1045858.Bint_1766PF12796 PF00023
1045858.Bint_1769PF13637 PF12796
1045858.Bint_2444(PF00515) (PF13181)
1045858.Bint_2713(PF00515) (PF13181)
1045858.Bint_0572(PF00515) (PF13181)
1045858.Bint_1530(PF00182)
1045858.Bint_2898(PF01554)
1045858.Bint_2765(PF02743)
1045858.Bint_0498(PF01554)
1045858.Bint_0140(PF00182)
1045858.Bint_0722(PF01195)
1045858.Bint_0721(PF01195)
1045858.Bint_1033(PF01531)
1045858.Bint_2421PF12895
1045858.Bint_2178PF03382
1045858.Bint_0556(PF13306)
1045858.Bint_0939(PF07678)
1045858.Bint_0936PF03382
1045858.Bint_0932PF03382
1045858.Bint_0931PF03382
1045858.Bint_1998PF03382
1045858.Bint_1465(PF01554)
1045858.Bint_1861(PF02743)
1045858.Bint_2562PF03382
1045858.Bint_2097(PF16314)
1045858.Bint_2741(PF02915)
1045858.Bint_2749(PF01554)
1045858.Bint_0123PF11443
1045858.Bint_0238(PF09511)
1045858.Bint_1473(PF01531)
1045858.Bint_1750(PF01554)
1045858.Bint_0220(PF01554)
1045858.Bint_0593PF12796
1045858.Bint_0047(PF01554)
1045858.Bint_1062(PF13181)
1045858.Bint_0058(PF00515)
1045858.Bint_1298PF12796
1045858.Bint_2216PF12796
1045858.Bint_0109(PF00515)
1045858.Bint_0214PF12895
1045858.Bint_1098(PF13181)
1045858.Bint_2688(PF02915)
1045858.Bint_2332PF12796
1045858.Bint_0664(PF00209)
1045858.Bint_0061(PF00182)
1045858.Bint_2832PF12796
1045858.Bint_2780(PF00209)
1045858.Bint_1788PF12796
1045858.Bint_1433(PF01442)
1045858.Bint_2008PF12796
1045858.Bint_2002(PF01554)
1045858.Bint_1248(PF13174)
1045858.Bint_1358(PF07719)
1045858.Bint_2811PF12796
1045858.Bint_2258PF03382
1045858.Bint_2076(PF13429)
1045858.Bint_2108(PF02915)
1045858.Bint_0747(PF13306)
1045858.Bint_0532(PF04471)
1045858.Bint_0533(PF01554)
1045858.Bint_0536PF03382
1045858.Bint_1594(PF06241)
1045858.Bint_0750(PF13306)
1045858.Bint_0046(PF01554)
1045858.Bint_2478(PF01501)
1045858.Bint_1802(PF13181)
1045858.Bint_1805PF03382
1045858.Bint_1807PF03382
1045858.Bint_1806PF03382
1045858.Bint_1809PF03382
1045858.Bint_1808PF03382
1045858.Bint_2121PF12796
1045858.Bint_0346PF08433
1045858.Bint_0966(PF03724)
1045858.Bint_2468(PF02915)
1045858.Bint_2910PF12796
1045858.Bint_2261PF03382
1045858.Bint_2262PF12796
1045858.Bint_1810PF03382
1045858.Bint_2044(PF02743)
1045858.Bint_2047(PF01554)
1045858.Bint_0773(PF03724)
1045858.Bint_1175PF03382
1045858.Bint_1951(PF02743)
1045858.Bint_1829(PF13181)
1045858.Bint_0566(PF13181)
1045858.Bint_0568(PF02743)
1045858.Bint_1760PF03382
1045858.Bint_0360(PF04471)
1045858.Bint_0949(PF01554)
1045858.Bint_2843(PF00515)
1045858.Bint_1015(PF01501)
1045858.Bint_1830(PF13181)
1045858.Bint_2154PF00023
1045858.Bint_2151PF12796

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================