Effective results for Streptococcus pseudopneumoniae IS7493 (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 110
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 28 proteins (3 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1054460.SPPN_07015			+		ER
1054460.SPPN_00190			+		mitochondrial; (mitochondrial)
1054460.SPPN_01100				PF09683	ER
1054460.SPPN_00960			+		ER; (ER)
1054460.SPPN_06385			+		ER
1054460.SPPN_11160			+		ER
1054460.SPPN_05045			+		ER
1054460.SPPN_05040			+		ER
1054460.SPPN_08445			+		ER
1054460.SPPN_04145				(PF06280)	(ER)
1054460.SPPN_00240			+		ER
1054460.SPPN_00520			+		(mitochondrial)
1054460.SPPN_04605			+		ER
1054460.SPPN_09885			+		mitochondrial; (mitochondrial)
1054460.SPPN_01390			+		ER
1054460.SPPN_00065			+		ER
1054460.SPPN_06615			+		ER
1054460.SPPN_00615			+		ER
1054460.SPPN_02500			+		ER
1054460.SPPN_09235			+		mitochondrial
1054460.SPPN_08835			+		ER
1054460.SPPN_03565				PF09683	ER
1054460.SPPN_10200				PF09683	ER
1054460.SPPN_01455			+		mitochondrial
1054460.SPPN_07655			+		ER
1054460.SPPN_03355				(PF06280)	ER
1054460.SPPN_03175			+		mitochondrial
1054460.SPPN_02085				(PF03714)	(mitochondrial)
1054460.SPPN_08360			+		(mitochondrial); (plastid)
1054460.SPPN_04135			+		ER
1054460.SPPN_01015			+		ER
1054460.SPPN_00010			+		mitochondrial; (mitochondrial)
1054460.SPPN_09350			+		(mitochondrial)
1054460.SPPN_07555			+		(mitochondrial)
1054460.SPPN_01075			+		(mitochondrial)
1054460.SPPN_10110			+		(mitochondrial)
1054460.SPPN_07060			+		(mitochondrial)
1054460.SPPN_00375			+
1054460.SPPN_07430				(PF13592)
1054460.SPPN_06740				(PF04991)
1054460.SPPN_07195			+
1054460.SPPN_10645			+
1054460.SPPN_06170			+
1054460.SPPN_02905				(PF13359)
1054460.SPPN_07160				(PF13359)
1054460.SPPN_03335			+
1054460.SPPN_02640			+
1054460.SPPN_05595			+
1054460.SPPN_09635			+
1054460.SPPN_01900			+
1054460.SPPN_10175			+
1054460.SPPN_02490			+
1054460.SPPN_11390			+
1054460.SPPN_00535				(PF13592)
1054460.SPPN_04700				(PF13359)
1054460.SPPN_06520				(PF13359)
1054460.SPPN_09010			+
1054460.SPPN_09275			+
1054460.SPPN_10975			+
1054460.SPPN_04770				(PF13592)
1054460.SPPN_04910				(PF13359)
1054460.SPPN_02700			+
1054460.SPPN_07935				(PF03596)
1054460.SPPN_08605				(PF08975)
1054460.SPPN_08110			+
1054460.SPPN_00265			+
1054460.SPPN_06500			+
1054460.SPPN_09075			+
1054460.SPPN_05555				(PF03714)
1054460.SPPN_06325				(PF04991)
1054460.SPPN_05375			+
1054460.SPPN_10950				(PF13359)
1054460.SPPN_10005			+
1054460.SPPN_06405				(PF13592)
1054460.SPPN_03035			+
1054460.SPPN_03740				(PF13592)
1054460.SPPN_10225			+
1054460.SPPN_11265			+
1054460.SPPN_01710			+
1054460.SPPN_07105			+
1054460.SPPN_03935				(PF03596)
1054460.SPPN_02995			+
1054460.SPPN_06415				(PF13359)
1054460.SPPN_00455			+
1054460.SPPN_06390			+
1054460.SPPN_06330				(PF04991)
1054460.SPPN_02365			+
1054460.SPPN_02960			+
1054460.SPPN_08375			+
1054460.SPPN_01045			+
1054460.SPPN_10695			+
1054460.SPPN_02170				(PF13592)
1054460.SPPN_10870			+
1054460.SPPN_03590			+
1054460.SPPN_05685			+
1054460.SPPN_08365			+
1054460.SPPN_04460			+
1054460.SPPN_10910			+
1054460.SPPN_07465			+
1054460.SPPN_02435			+
1054460.SPPN_08990			+
1054460.SPPN_10895			+
1054460.SPPN_11300			+
1054460.SPPN_02930				(PF03644)
1054460.SPPN_05530			+
1054460.SPPN_01780			+
1054460.SPPN_07625			+
1054460.SPPN_10060			+
1054460.SPPN_07245				(PF13359)
1054460.SPPN_05815			+
1054460.SPPN_02455			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================