Effective results for Alteromonadales bacterium TW-7 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 37 proteins (2 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
156578.ATW7_12281				(PF04127)	mitochondrial
156578.ATW7_02797				(PF16187)	ER
156578.ATW7_02562				(PF00883)	(mitochondrial); (plastid)
156578.ATW7_12883				(PF00930)	ER
156578.ATW7_00685				(PF00930)	ER
156578.ATW7_00990				(PF00930)	(ER); ER
156578.ATW7_16383				PF00036	ER
156578.ATW7_15974				(PF00245)	ER
156578.ATW7_15979				(PF00245)	ER
156578.ATW7_05936				(PF08547)	ER
156578.ATW7_00330				(PF00245)	ER
156578.ATW7_12698				(PF00883)	(ER)
156578.ATW7_11095				(PF00930)	ER
156578.ATW7_08731				(PF09317)	ER
156578.ATW7_02257				(PF00930)	ER
156578.ATW7_08866				(PF09317)	ER
156578.ATW7_16393				PF00036	ER
156578.ATW7_11105				(PF00883)	(ER)
156578.ATW7_02307				(PF08547)	(mitochondrial)
156578.ATW7_13038				(PF08695)	(mitochondrial)
156578.ATW7_07037				(PF02224)	(ER); not used
156578.ATW7_12288				(PF04127)	not used
156578.ATW7_04067				(PF00883)
156578.ATW7_10283				(PF07700)
156578.ATW7_00325				(PF00245)
156578.ATW7_12448				(PF02224)	not used
156578.ATW7_07659				(PF06315)
156578.ATW7_02937				(PF09317)
156578.ATW7_05641				(PF16187)
156578.ATW7_10173				(PF10013)	not used
156578.ATW7_03872				(PF12576)
156578.ATW7_04237				(PF07700)
156578.ATW7_02397				(PF10354)
156578.ATW7_08269				(PF06315)
156578.ATW7_13448				(PF02460)
156578.ATW7_01500				(PF13875)
156578.ATW7_11370				(PF00883)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================