Metamenu

Effective results for Synechococcus sp. WH 8109 (eggnog40)

Summary

Number of putative secreted proteins: 114
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 94 eukaryotic-like domains, contained in 114 proteins (4 high, 110 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
166314.SH8109_2491(PF16639) (PF01333)ER
166314.SH8109_0533(PF16166)ER
166314.SH8109_2202(PF01789)ER
166314.SH8109_2378(PF12452)(ER)
166314.SH8109_0435(PF01737)ER
166314.SH8109_0838(PF06514)ER
166314.SH8109_1949(PF12159)ER
166314.SH8109_0220(PF01716)ER
166314.SH8109_0791(PF00124)ER; (mitochondrial)
166314.SH8109_0007(PF12899)(mitochondrial)
166314.SH8109_0109(PF12046)ER
166314.SH8109_1518(PF10716)ER
166314.SH8109_1519(PF11460)ER
166314.SH8109_2421(PF13326)ER
166314.SH8109_0766(PF10664)(mitochondrial)
166314.SH8109_0914(PF07444)ER
166314.SH8109_0436(PF04481)(mitochondrial)
166314.SH8109_2484(PF02507)ER
166314.SH8109_0091(PF06206)(mitochondrial)
166314.SH8109_1070(PF11317)ER
166314.SH8109_1858(PF04483)(mitochondrial)
166314.SH8109_1963(PF11264)(ER)
166314.SH8109_2232(PF06298)ER
166314.SH8109_0263(PF12600)ER
166314.SH8109_0330(PF00284) (PF00283)
166314.SH8109_1165PF02005(mitochondrial)
166314.SH8109_1161(PF02392)(mitochondrial)
166314.SH8109_2626(PF02427)(mitochondrial)
166314.SH8109_0115(PF02531)(mitochondrial)
166314.SH8109_1739(PF11347)(plastid)
166314.SH8109_2428(PF11016)(ER)
166314.SH8109_0287(PF02533)ER; not used
166314.SH8109_0915(PF06596)ER; not used
166314.SH8109_1869(PF03040)(mitochondrial)
166314.SH8109_0651(PF01947)(ER)
166314.SH8109_0988(PF13759)(ER)
166314.SH8109_0261(PF02468)ER; not used
166314.SH8109_0991(PF11805)(ER)
166314.SH8109_0205(PF09366)
166314.SH8109_0331(PF00283)not used
166314.SH8109_0333(PF01788)
166314.SH8109_0332PF02419not used
166314.SH8109_1000(PF04839)
166314.SH8109_1797(PF11833)
166314.SH8109_2373(PF12527)
166314.SH8109_0237(PF07444)
166314.SH8109_0789(PF00124)
166314.SH8109_0302(PF03492)
166314.SH8109_1948(PF10693)
166314.SH8109_1160(PF00124)
166314.SH8109_0227(PF04483)
166314.SH8109_0825(PF12095)
166314.SH8109_1571(PF00124)
166314.SH8109_1685(PF11947)
166314.SH8109_2317(PF06799)
166314.SH8109_0368(PF11623)
166314.SH8109_1561(PF08854)
166314.SH8109_2329(PF11397)
166314.SH8109_0803(PF11910)
166314.SH8109_1512(PF01786)
166314.SH8109_0764(PF11371)
166314.SH8109_0817(PF05421)
166314.SH8109_2602(PF10063)
166314.SH8109_2604(PF02672)
166314.SH8109_1800(PF12049)
166314.SH8109_0633(PF00504)
166314.SH8109_0129(PF14159)
166314.SH8109_1211(PF14159)
166314.SH8109_0911(PF00504)
166314.SH8109_0135(PF10999)
166314.SH8109_1393(PF13355)
166314.SH8109_1661(PF07082)
166314.SH8109_1713(PF11282)
166314.SH8109_1248(PF13911)
166314.SH8109_2284(PF01744)
166314.SH8109_2288(PF08417)
166314.SH8109_1131(PF08853)
166314.SH8109_2277(PF13759)
166314.SH8109_2013(PF00504)
166314.SH8109_0422PF16994
166314.SH8109_1065(PF08855)
166314.SH8109_1280(PF08847)
166314.SH8109_1112(PF11341)
166314.SH8109_1847(PF11210)
166314.SH8109_2485(PF01701)not used
166314.SH8109_2488(PF11267)
166314.SH8109_0259(PF00737)
166314.SH8109_0092(PF03130)
166314.SH8109_0093(PF03130)
166314.SH8109_0897(PF02943)
166314.SH8109_2255(PF00504)
166314.SH8109_1105(PF03130)
166314.SH8109_0088(PF05996)
166314.SH8109_0087(PF05996)
166314.SH8109_1965PF03742not used
166314.SH8109_0065(PF06206)
166314.SH8109_0279(PF09366)
166314.SH8109_0273(PF11378)
166314.SH8109_1587(PF02672)
166314.SH8109_0186(PF12204)
166314.SH8109_0187(PF00223)
166314.SH8109_0182(PF00796)not used
166314.SH8109_0183(PF02605)
166314.SH8109_0188(PF00223)
166314.SH8109_1909(PF09353)
166314.SH8109_0262(PF02532)not used
166314.SH8109_2597(PF00124)
166314.SH8109_0212(PF00124)
166314.SH8109_0856(PF00504)not used
166314.SH8109_0142(PF12617)
166314.SH8109_0143(PF11909)
166314.SH8109_2218(PF10674)
166314.SH8109_1928(PF11360)
166314.SH8109_1741(PF05996)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================