Metamenu

Effective results for Leptospira interrogans serovar Lai str. 56601 (eggnog40)

Summary

Number of putative secreted proteins: 184
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 184 proteins (71 high, 113 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
189518.LA_3322PF00560 (PF13855)(ER); ER
189518.LA_2447PF00560 (PF13855)ER
189518.LA_2964PF00560 (PF13855)(ER)
189518.LB_208(PF03062)ER
189518.LA_2489(PF03062)ER
189518.LA_2798(PF08570)ER
189518.LA_1861(PF07819)ER
189518.LA_0312(PF01551)ER
189518.LA_4213(PF01551)ER
189518.LA_3320PF00560 (PF13855)(ER)
189518.LA_3324(PF13855)(ER)
189518.LA_2493PF02371(mitochondrial)
189518.LA_2256(PF03062)ER
189518.LA_1324(PF13855)ER
189518.LA_4311(PF01551)ER
189518.LA_2267(PF13431)ER
189518.LA_0426PF06739ER
189518.LA_0420(PF05345)ER
189518.LA_0423PF06739ER
189518.LA_2448(PF13855)ER
189518.LA_2452(PF13855)ER
189518.LA_2450(PF13855)(ER); ER
189518.LA_1504(PF01551)(ER)
189518.LA_3463(PF15071)ER
189518.LA_0351(PF13174)ER
189518.LA_3456(PF01551)ER; (ER)
189518.LA_2854(PF05345)ER
189518.LA_2505(PF07819)ER
189518.LA_1568PF06739ER
189518.LA_1569PF06739ER
189518.LA_0587(PF07819)ER
189518.LA_1365(PF03062)ER
189518.LA_0378(PF13174)ER
189518.LA_0715(PF05345)ER
189518.LA_1177(PF13855)ER
189518.LA_0399PF01731(ER); ER
189518.LA_3726(PF05345)ER
189518.LA_3736(PF13174)ER
189518.LA_2771(PF03062)ER
189518.LA_1493(PF01551)ER
189518.LA_3573(PF02348)mitochondrial
189518.LA_0283PF06739ER
189518.LA_0990PF10520(ER)
189518.LA_2966(PF13855)(ER)
189518.LA_2290(PF03062)ER
189518.LB_348(PF08570)ER
189518.LA_2582(PF01551)ER
189518.LB_359(PF03062)(ER)
189518.LA_1203(PF03062)ER
189518.LA_2901(PF01551)ER
189518.LB_210(PF03062)ER
189518.LA_2124(PF03062)ER
189518.LA_1691PF06739ER
189518.LA_3834PF06739ER
189518.LA_0873(PF13855)ER
189518.LA_4159PF16073(mitochondrial)
189518.LA_3323(PF13855)(ER)
189518.LA_3028(PF13855) PF05406
189518.LA_2862PF00560 (PF13855)
189518.LA_0923PF02371(mitochondrial)
189518.LA_3003(PF01551)(mitochondrial)
189518.LA_1353(PF13855)(mitochondrial)
189518.LA_4264(PF07479) (PF01210)
189518.LA_2088PF14956(mitochondrial)
189518.LA_1625(PF02348)(mitochondrial)
189518.LA_3939(PF07479) (PF01210)
189518.LA_1922(PF02493)(plastid)
189518.LB_225(PF05345)(ER)
189518.LA_1112(PF07479) (PF01210)
189518.LA_2800(PF07787)
189518.LA_1043(PF01551)
189518.LA_1044(PF04519)
189518.LA_3820(PF01195)
189518.LA_1461PF02371
189518.LA_0799(PF04519)
189518.LA_4144(PF02493)
189518.LA_3033PF05406
189518.LA_3321(PF13855)
189518.LA_3250PF02371
189518.LA_0418PF02371
189518.LA_0307PF02371
189518.LA_3097aPF02371
189518.LA_1327(PF01740)
189518.LA_2443(PF13855)
189518.LA_2446(PF13855)
189518.LA_1886(PF01740)
189518.LA_1530(PF13855)
189518.LA_4120(PF01551)
189518.LA_3497PF05406
189518.LA_3276PF06739
189518.LA_2692(PF04768)
189518.LA_3300(PF04519)
189518.LA_4208(PF13600)
189518.LA_4209(PF13600)
189518.LA_2998(PF04519)
189518.LA_2518PF02371
189518.LB_048PF02371
189518.LA_2914aPF02371
189518.LA_0775PF02371
189518.LA_1354(PF13855)
189518.LA_4071PF02371
189518.LA_2858PF02371
189518.LA_3070(PF01740)
189518.LB_295PF02371
189518.LA_2434(PF01740)
189518.LB_078(PF13174)
189518.LA_0348(PF01740)
189518.LA_1567PF06739
189518.LA_1565PF02371
189518.LA_3876(PF13174)
189518.LA_0585PF02371
189518.LA_2729PF02371
189518.LA_1361PF02371
189518.LA_3665(PF01740)
189518.LA_3284PF10373
189518.LA_3281PF02371
189518.LB_062(PF01740)
189518.LA_0489PF02371
189518.LA_0395(PF01740)
189518.LA_3618PF02371
189518.LA_3619PF02371
189518.LA_3059PF02371
189518.LA_3542PF02371
189518.LA_1615(PF02348)
189518.LA_1613(PF03102)
189518.LA_2524PF02371
189518.LA_0561PF02371
189518.LA_0701(PF13855)
189518.LA_0703PF05406
189518.LA_0702PF02371
189518.LA_0705(PF13855)
189518.LA_0709(PF01551)
189518.LA_0149(PF00856)
189518.LA_0636PF02371
189518.LA_1605(PF02348)
189518.LA_1609(PF03102)
189518.LA_3955PF02371
189518.LA_3956PF02371
189518.LB_136(PF01740)
189518.LA_0605(PF00856)
189518.LA_3639(PF01740)
189518.LA_3093(PF01551)
189518.LA_3096(PF01740)
189518.LA_3898PF02371
189518.LA_0839(PF01740)
189518.LA_1233PF02371
189518.LA_3572(PF01740)
189518.LA_3884(PF01740)
189518.LA_3882PF02371
189518.LA_2377(PF01551)
189518.LA_3978(PF00856)
189518.LA_2117(PF01740)
189518.LB_022PF02371
189518.LA_0536(PF10974)
189518.LA_1006PF02371
189518.LA_0269PF02371
189518.LA_0262(PF01551)
189518.LA_3165(PF02493)
189518.LA_3167PF02371
189518.LA_3983PF02371
189518.LA_2294PF02371
189518.LB_345PF02371
189518.LA_1030(PF13174)
189518.LA_2581(PF03102)
189518.LA_0985PF05406
189518.LA_0984PF05406
189518.LA_0451PF02371
189518.LA_0673(PF02348)
189518.LA_1210(PF13911)
189518.LA_2914PF02371
189518.LA_3195PF02371
189518.LA_1734(PF01740)
189518.LA_0465(PF13431)
189518.LA_1441PF02371
189518.LA_0861(PF01740)
189518.LA_0087PF02371
189518.LA_4341(PF01551)
189518.LA_4342(PF04519)
189518.LA_4160(PF11074)
189518.LA_3741(PF02493)
189518.LA_2349(PF01195)
189518.LA_3833(PF10974)
189518.LA_3830PF02371
189518.LA_0653(PF01740)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================