Effective results for Xanthomonas campestris pv. campestris str. ATCC 33913 (eggnog40)
Summary
Number of putative secreted proteins: 705
- Predicted by EffectiveT3: 196 (high confidence), 298 (low confidence)
- Predicted by EffectiveCCBD: 6 within, 7 before, 27 behind expected region 25..70aa
- Predicted by T4SEpre: 58
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 144 proteins (75 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 190485.XCC0400 | PF13276 PF13683 | (mitochondrial) | |||
| 190485.XCC3576 | PF13276 PF13683 | (mitochondrial) | |||
| 190485.XCC2576 | (PF05649) (PF01431) | ER | |||
| 190485.XCC2575 | (PF05649) (PF01431) | ER | |||
| 190485.XCC3218 | PF13276 PF13683 | (mitochondrial) | |||
| 190485.XCC3671 | (PF05649) (PF01431) | ER | |||
| 190485.XCC3463 | PF13276 PF13683 | (mitochondrial) | |||
| 190485.XCC0007 | + | (PF09295) | ER | ||
| 190485.XCC2710 | (PF05649) (PF01431) | ER | |||
| 190485.XCC3139 | PF13276 PF13683 | (mitochondrial) | |||
| 190485.XCC0560 | PF13276 PF13683 | mitochondrial | |||
| 190485.XCC2035 | (PF05649) (PF01431) | ER | |||
| 190485.XCC2942 | (PF10142) | ER | |||
| 190485.XCC1142 | + | ER | |||
| 190485.XCC3548 | (PF00930) | ER | |||
| 190485.XCC3307 | PF13276 PF13683 | (plastid) | |||
| 190485.XCC1452 | + | mitochondrial | |||
| 190485.XCC1455 | PF13276 PF13683 | (plastid) | |||
| 190485.XCC0890 | + | (mitochondrial) | |||
| 190485.XCC3768 | + | + | (plastid) | ||
| 190485.XCC0538 | + | ER | |||
| 190485.XCC2792 | (>) | ER | |||
| 190485.XCC1592 | + | (mitochondrial) | |||
| 190485.XCC1668 | (+) | + | (mitochondrial) | ||
| 190485.XCC1667 | + | ER | |||
| 190485.XCC3193 | (PF08332) | ER | |||
| 190485.XCC4015 | + | (mitochondrial); (plastid) | |||
| 190485.XCC3961 | (PF00930) | ER | |||
| 190485.XCC3960 | + | (PF08695) | (plastid) | ||
| 190485.XCC2618 | + | ER | |||
| 190485.XCC2974 | + | + | (plastid) | ||
| 190485.XCC0336 | + | ER | |||
| 190485.XCC0428 | (PF07653) | (mitochondrial); mitochondrial | |||
| 190485.XCC1118 | + | (ER); (plastid) | |||
| 190485.XCC1672 | (>) | (ER); (mitochondrial) | |||
| 190485.XCC2374 | + | mitochondrial; (plastid) | |||
| 190485.XCC0049 | (PF08975) | (ER) | |||
| 190485.XCC2292 | (>) | ER | |||
| 190485.XCC0673 | (<) | ER | |||
| 190485.XCC3508 | (PF08212) | ER | |||
| 190485.XCC3233 | + | (mitochondrial) | |||
| 190485.XCC1817 | + | (mitochondrial) | |||
| 190485.XCC4162 | (>) | mitochondrial; (mitochondrial) | |||
| 190485.XCC0440 | + | mitochondrial; (mitochondrial) | |||
| 190485.XCC0287 | + | (mitochondrial) | |||
| 190485.XCC2132 | + | (mitochondrial) | |||
| 190485.XCC1628 | PF13276 PF13683 | (plastid) | |||
| 190485.XCC2698 | + | (mitochondrial); plastid | |||
| 190485.XCC4016 | (PF00930) | ER | |||
| 190485.XCC3871 | (PF01163) | mitochondrial | |||
| 190485.XCC2430 | (PF08212) | ER | |||
| 190485.XCC1633 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190485.XCC3380 | (PF01670) | ER | |||
| 190485.XCC3532 | + | (mitochondrial) | |||
| 190485.XCC1029 | (>) | mitochondrial | |||
| 190485.XCC2397 | (PF00930) | mitochondrial | |||
| 190485.XCC0865 | + | (ER) | |||
| 190485.XCC3114 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190485.XCC3284 | + | mitochondrial; (mitochondrial) | |||
| 190485.XCC2897 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190485.XCC3908 | (<) | ER | |||
| 190485.XCC1031 | + | (mitochondrial) | |||
| 190485.XCC3271 | + | ER | |||
| 190485.XCC4123 | (PF08212) | ER | |||
| 190485.XCC4126 | + | (mitochondrial) | |||
| 190485.XCC1942 | + | (mitochondrial); plastid | |||
| 190485.XCC2405 | (PF00930) | (ER) | |||
| 190485.XCC2255 | + | (mitochondrial) | |||
| 190485.XCC3131 | + | (ER) | |||
| 190485.XCC2872 | + | (ER); (plastid) | |||
| 190485.XCC2265 | + | ER | |||
| 190485.XCC3580 | PF13276 PF13683 | (plastid) | |||
| 190485.XCC3582 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190485.XCC3635 | + | (mitochondrial); plastid | |||
| 190485.XCC2315 | + | ER | |||
| 190485.XCC3128 | (<) | ER | |||
| 190485.XCC0226 | + | mitochondrial | |||
| 190485.XCC4210 | + | ER | |||
| 190485.XCC4051 | + | (ER) | |||
| 190485.XCC1179 | + | (mitochondrial); (plastid) | |||
| 190485.XCC1795 | PF13276 PF13683 | plastid | |||
| 190485.XCC3480 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190485.XCC0827 | (PF08332) | ER | |||
| 190485.XCC2332 | (>) | ER | |||
| 190485.XCC1224 | + | mitochondrial | |||
| 190485.XCC3036 | (>) | ER | |||
| 190485.XCC1545 | + | (ER) | |||
| 190485.XCC1945 | (>) | ER | |||
| 190485.XCC1941 | + | (>) | plastid | ||
| 190485.XCC3952 | + | mitochondrial | |||
| 190485.XCC1440 | + | ER | |||
| 190485.XCC1940 | + | plastid | |||
| 190485.XCC1365 | (+) | mitochondrial | |||
| 190485.XCC1209 | PF01609 (PF05598) | ||||
| 190485.XCC1201 | + | (ER) | |||
| 190485.XCC0570 | PF01609 (PF05598) | ||||
| 190485.XCC0638 | PF01609 (PF05598) | ||||
| 190485.XCC3303 | PF01609 (PF05598) | ||||
| 190485.XCC2490 | PF01609 (PF05598) | ||||
| 190485.XCC2492 | + | + | |||
| 190485.XCC1454 | PF01609 (PF05598) | ||||
| 190485.XCC1928 | + | plastid | |||
| 190485.XCC1217 | + | + | |||
| 190485.XCC1685 | + | (ER) | |||
| 190485.XCC0535 | PF01609 (PF05598) | ||||
| 190485.XCC3378 | (PF14686) PF09284 | ||||
| 190485.XCC3379 | + | (PF14683) | |||
| 190485.XCC0329 | (+) | (mitochondrial) | |||
| 190485.XCC2369 | + | (plastid) | |||
| 190485.XCC0616 | + | (ER) | |||
| 190485.XCC3367 | (+) | (mitochondrial) | |||
| 190485.XCC2105 | PF01609 (PF05598) | ||||
| 190485.XCC1674 | + | (>) | |||
| 190485.XCC3214 | PF01609 (PF05598) | ||||
| 190485.XCC3745 | (+) | (>) | |||
| 190485.XCC2583 | (+) | (ER); plastid | |||
| 190485.XCC2574 | (PF05649) (PF01431) | ||||
| 190485.XCC2772 | (+) | ER | |||
| 190485.XCC0609 | PF01609 | (mitochondrial); not used | |||
| 190485.XCC3518 | (+) | ER | |||
| 190485.XCC1248 | PF01609 (PF05598) | ||||
| 190485.XCC4192 | PF01609 (PF05598) | ||||
| 190485.XCC0524 | + | plastid | |||
| 190485.XCC0576 | (+) | ER | |||
| 190485.XCC3343 | PF01609 (PF05598) | ||||
| 190485.XCC0852 | (+) | (mitochondrial) | |||
| 190485.XCC1255 | PF01609 (PF05598) | ||||
| 190485.XCC3063 | (+) | (ER); (plastid) | |||
| 190485.XCC0288 | + | (plastid) | |||
| 190485.XCC1006 | (+) | (ER) | |||
| 190485.XCC3867 | (+) | (ER) | |||
| 190485.XCC3401 | + | (mitochondrial) | |||
| 190485.XCC3087 | (+) | ER; (ER) | |||
| 190485.XCC3392 | + | (mitochondrial) | |||
| 190485.XCC3897 | + | + | |||
| 190485.XCC0472 | + | (plastid) | |||
| 190485.XCC3875 | (PF08212) | (mitochondrial) | |||
| 190485.XCC3707 | + | (plastid) | |||
| 190485.XCC3675 | (+) | (mitochondrial); (plastid) | |||
| 190485.XCC0127 | PF01609 (PF05598) | ||||
| 190485.XCC0005 | + | plastid | |||
| 190485.XCC3848 | (>) | (plastid) | |||
| 190485.XCC2896 | + | (PF02902) | |||
| 190485.XCC1609 | PF01609 (PF05598) | ||||
| 190485.XCC3280 | (+) | (mitochondrial); (plastid) | |||
| 190485.XCC2709 | PF01609 (PF05598) | ||||
| 190485.XCC0928 | + | (mitochondrial) | |||
| 190485.XCC4120 | + | (plastid) | |||
| 190485.XCC0241 | + | + | |||
| 190485.XCC4231 | (+) | (mitochondrial) | |||
| 190485.XCC1943 | + | mitochondrial | |||
| 190485.XCC1753 | (+) | ER; (ER) | |||
| 190485.XCC2403 | + | (plastid) | |||
| 190485.XCC2400 | + | (ER) | |||
| 190485.XCC3627 | PF01609 (PF05598) | ||||
| 190485.XCC0021 | (+) | (mitochondrial) | |||
| 190485.XCC4050 | (+) | mitochondrial; plastid | |||
| 190485.XCC0232 | + | (plastid) | |||
| 190485.XCC0346 | + | (plastid) | |||
| 190485.XCC2470 | PF01609 (PF05598) | ||||
| 190485.XCC0769 | (+) | (mitochondrial); (plastid) | |||
| 190485.XCC3585 | PF01609 (PF05598) | ||||
| 190485.XCC3586 | PF01609 (PF05598) | ||||
| 190485.XCC2055 | (+) | ER; (mitochondrial) | |||
| 190485.XCC0832 | + | (mitochondrial) | |||
| 190485.XCC1415 | + | (plastid) | |||
| 190485.XCC0839 | (+) | (ER); plastid | |||
| 190485.XCC3125 | PF13276 | (plastid) | |||
| 190485.XCC3122 | PF01609 (PF05598) | ||||
| 190485.XCC4107 | (+) | ER | |||
| 190485.XCC0228 | + | (>) | |||
| 190485.XCC4214 | (+) | (mitochondrial); plastid | |||
| 190485.XCC1797 | PF01609 (PF05598) | ||||
| 190485.XCC0823 | (+) | (mitochondrial) | |||
| 190485.XCC2038 | + | plastid | |||
| 190485.XCC1638 | PF01609 (PF05598) | ||||
| 190485.XCC2447 | (+) | (mitochondrial) | |||
| 190485.XCC0553 | (<) | + | |||
| 190485.XCC3557 | + | (mitochondrial) | |||
| 190485.XCC3558 | + | plastid | |||
| 190485.XCC3318 | + | plastid | |||
| 190485.XCC1449 | (+) | (mitochondrial) | |||
| 190485.XCC3771 | + | ||||
| 190485.XCC3005 | + | ||||
| 190485.XCC4034 | + | ||||
| 190485.XCC1935 | (+) | (mitochondrial) | |||
| 190485.XCC0155 | + | ||||
| 190485.XCC1093 | + | ||||
| 190485.XCC0309 | + | ||||
| 190485.XCC1206 | + | ||||
| 190485.XCC3493 | (+) | + | |||
| 190485.XCC2336 | + | ||||
| 190485.XCC2231 | + | ||||
| 190485.XCC0676 | (+) | (plastid) | |||
| 190485.XCC2789 | + | ||||
| 190485.XCC2784 | + | ||||
| 190485.XCC4094 | + | ||||
| 190485.XCC3306 | (PF01527) | ||||
| 190485.XCC3300 | (PF01764) | ||||
| 190485.XCC2169 | + | ||||
| 190485.XCC2160 | + | ||||
| 190485.XCC1456 | (PF01527) | ||||
| 190485.XCC2510 | (+) | (plastid) | |||
| 190485.XCC0092 | + | ||||
| 190485.XCC3974 | + | ||||
| 190485.XCC0110 | + | ||||
| 190485.XCC1215 | + | ||||
| 190485.XCC1138 | + | ||||
| 190485.XCC0401 | + | ||||
| 190485.XCC1045 | + | ||||
| 190485.XCC1042 | (PF16387) | ||||
| 190485.XCC0533 | (PF01527) | ||||
| 190485.XCC0534 | PF13276 | ||||
| 190485.XCC3571 | PF01609 | ||||
| 190485.XCC3572 | (PF01527) | ||||
| 190485.XCC3573 | PF13683 | ||||
| 190485.XCC3575 | (PF01527) | ||||
| 190485.XCC3578 | PF01609 | ||||
| 190485.XCC2797 | (+) | (plastid) | |||
| 190485.XCC1591 | + | ||||
| 190485.XCC0626 | + | ||||
| 190485.XCC3371 | + | ||||
| 190485.XCC3376 | (+) | (mitochondrial) | |||
| 190485.XCC3377 | PF09284 | ||||
| 190485.XCC3196 | PF01609 | ||||
| 190485.XCC3199 | PF01609 | ||||
| 190485.XCC0953 | (<) | ||||
| 190485.XCC3683 | + | ||||
| 190485.XCC2816 | PF01609 | ||||
| 190485.XCC1912 | + | ||||
| 190485.XCC2961 | (+) | (mitochondrial) | |||
| 190485.XCC1265 | (+) | (ER) | |||
| 190485.XCC0433 | + | ||||
| 190485.XCC1696 | + | ||||
| 190485.XCC2566 | + | ||||
| 190485.XCC1585 | + | ||||
| 190485.XCC1584 | + | ||||
| 190485.XCC0610 | PF13683 | ||||
| 190485.XCC0611 | (PF01527) | ||||
| 190485.XCC2365 | + | ||||
| 190485.XCC0612 | (PF01527) | not used | |||
| 190485.XCC3362 | + | ||||
| 190485.XCC2102 | (PF13455) | ||||
| 190485.XCC2103 | + | ||||
| 190485.XCC2109 | + | ||||
| 190485.XCC1678 | (+) | (ER) | |||
| 190485.XCC3567 | + | ||||
| 190485.XCC2615 | + | ||||
| 190485.XCC1971 | + | ||||
| 190485.XCC1902 | (>) | ||||
| 190485.XCC1906 | + | ||||
| 190485.XCC0180 | + | ||||
| 190485.XCC1873 | + | ||||
| 190485.XCC1085 | + | ||||
| 190485.XCC0333 | (+) | (mitochondrial) | |||
| 190485.XCC0332 | + | not used | |||
| 190485.XCC0337 | + | ||||
| 190485.XCC0334 | + | not used | |||
| 190485.XCC0338 | + | ||||
| 190485.XCC1112 | + | ||||
| 190485.XCC2770 | (+) | (>) | |||
| 190485.XCC0931 | + | ||||
| 190485.XCC1953 | (>) | ||||
| 190485.XCC0607 | PF01609 | ||||
| 190485.XCC3428 | + | ||||
| 190485.XCC2110 | + | ||||
| 190485.XCC3217 | (PF01527) | ||||
| 190485.XCC1648 | (+) | (plastid) | |||
| 190485.XCC1641 | PF01609 | ||||
| 190485.XCC3732 | (PF01527) | ||||
| 190485.XCC3733 | PF13276 | ||||
| 190485.XCC3224 | + | ||||
| 190485.XCC2603 | + | ||||
| 190485.XCC2602 | (+) | (plastid) | |||
| 190485.XCC0198 | + | ||||
| 190485.XCC2512 | (<) | ||||
| 190485.XCC2903 | + | ||||
| 190485.XCC2907 | + | ||||
| 190485.XCC1809 | + | ||||
| 190485.XCC1400 | + | ||||
| 190485.XCC3950 | + | ||||
| 190485.XCC1240 | + | ||||
| 190485.XCC1243 | + | ||||
| 190485.XCC4190 | PF01609 | ||||
| 190485.XCC1079 | + | ||||
| 190485.XCC3543 | + | ||||
| 190485.XCC2425 | + | ||||
| 190485.XCC0679 | (+) | (plastid) | |||
| 190485.XCC1490 | + | ||||
| 190485.XCC3727 | + | ||||
| 190485.XCC3819 | + | ||||
| 190485.XCC2910 | + | ||||
| 190485.XCC0186 | (>) | ||||
| 190485.XCC3881 | + | ||||
| 190485.XCC3883 | + | ||||
| 190485.XCC4166 | + | ||||
| 190485.XCC4163 | + | ||||
| 190485.XCC0449 | (+) | + | |||
| 190485.XCC2753 | + | ||||
| 190485.XCC2283 | + | ||||
| 190485.XCC1451 | (>) | ||||
| 190485.XCC1512 | + | ||||
| 190485.XCC1515 | + | ||||
| 190485.XCC1627 | (PF01527) | ||||
| 190485.XCC3242 | + | ||||
| 190485.XCC3247 | + | ||||
| 190485.XCC2620 | + | ||||
| 190485.XCC3084 | (+) | (ER) | |||
| 190485.XCC3866 | + | ||||
| 190485.XCC0065 | + | ||||
| 190485.XCC4175 | + | ||||
| 190485.XCC4173 | (+) | (mitochondrial) | |||
| 190485.XCC4172 | (+) | plastid | |||
| 190485.XCC0278 | (>) | ||||
| 190485.XCC4224 | (>) | ||||
| 190485.XCC2722 | + | ||||
| 190485.XCC2343 | + | ||||
| 190485.XCC2212 | + | ||||
| 190485.XCC2213 | + | ||||
| 190485.XCC4185 | (+) | (plastid) | |||
| 190485.XCC0492 | + | ||||
| 190485.XCC1635 | (PF13086) | ||||
| 190485.XCC1634 | (PF01527) | ||||
| 190485.XCC1636 | PF01609 | ||||
| 190485.XCC3701 | + | not used | |||
| 190485.XCC2656 | PF17067 | ||||
| 190485.XCC3381 | (+) | (PF01670) | |||
| 190485.XCC0012 | (+) | (mitochondrial) | |||
| 190485.XCC4140 | (PF01527) | ||||
| 190485.XCC4141 | PF13276 | ||||
| 190485.XCC0128 | PF01609 | ||||
| 190485.XCC0467 | (<) | ||||
| 190485.XCC3718 | + | ||||
| 190485.XCC3713 | + | ||||
| 190485.XCC3327 | + | ||||
| 190485.XCC0393 | PF01609 | ||||
| 190485.XCC0399 | (PF01527) | ||||
| 190485.XCC3843 | + | ||||
| 190485.XCC0646 | + | ||||
| 190485.XCC2391 | + | ||||
| 190485.XCC1606 | (PF01527) | ||||
| 190485.XCC1607 | PF13683 | ||||
| 190485.XCC3464 | (PF01527) | ||||
| 190485.XCC1854 | + | ||||
| 190485.XCC3113 | (PF01527) | ||||
| 190485.XCC2898 | (PF01527) | ||||
| 190485.XCC0004 | + | ||||
| 190485.XCC0136 | PF01609 | ||||
| 190485.XCC1352 | + | ||||
| 190485.XCC3852 | + | ||||
| 190485.XCC2707 | (PF01527) | ||||
| 190485.XCC2708 | PF13276 | ||||
| 190485.XCC3001 | + | ||||
| 190485.XCC2095 | (+) | (PF13086) | |||
| 190485.XCC2098 | PF13683 | ||||
| 190485.XCC1289 | + | ||||
| 190485.XCC3270 | + | ||||
| 190485.XCC2073 | (+) | mitochondrial; not used | |||
| 190485.XCC3473 | PF01609 | ||||
| 190485.XCC1508 | + | ||||
| 190485.XCC0922 | + | ||||
| 190485.XCC3295 | + | ||||
| 190485.XCC3296 | (PF01764) | ||||
| 190485.XCC0039 | + | ||||
| 190485.XCC0030 | + | ||||
| 190485.XCC4128 | + | ||||
| 190485.XCC4129 | + | ||||
| 190485.XCC0107 | (+) | (mitochondrial) | |||
| 190485.XCC2245 | (+) | (PF04768) | |||
| 190485.XCC2244 | (+) | (mitochondrial) | |||
| 190485.XCC2248 | + | ||||
| 190485.XCC0145 | + | ||||
| 190485.XCC0147 | (+) | (ER) | |||
| 190485.XCC1949 | + | ||||
| 190485.XCC0750 | (PF11539) | ||||
| 190485.XCC2667 | + | ||||
| 190485.XCC3593 | + | ||||
| 190485.XCC2060 | (+) | mitochondrial; not used | |||
| 190485.XCC1577 | + | ||||
| 190485.XCC3623 | (PF01764) | ||||
| 190485.XCC3138 | (PF01527) | ||||
| 190485.XCC3133 | (PF13086) | ||||
| 190485.XCC3134 | (PF01527) | ||||
| 190485.XCC3135 | PF13683 | ||||
| 190485.XCC3136 | (PF01527) | ||||
| 190485.XCC2875 | + | ||||
| 190485.XCC1995 | + | ||||
| 190485.XCC1997 | (PF06884) | ||||
| 190485.XCC2981 | + | ||||
| 190485.XCC0238 | + | ||||
| 190485.XCC0239 | (+) | (>) | |||
| 190485.XCC0230 | + | ||||
| 190485.XCC0231 | + | ||||
| 190485.XCC3907 | PF01609 | ||||
| 190485.XCC2559 | (+) | (mitochondrial) | |||
| 190485.XCC0586 | + | ||||
| 190485.XCC0345 | + | ||||
| 190485.XCC0342 | + | ||||
| 190485.XCC2473 | PF13683 | not used | |||
| 190485.XCC2474 | + | ||||
| 190485.XCC0568 | + | ||||
| 190485.XCC0569 | (>) | ||||
| 190485.XCC0561 | (PF01527) | ||||
| 190485.XCC3581 | (PF01527) | ||||
| 190485.XCC3583 | (PF01527) | ||||
| 190485.XCC1561 | (>) | ||||
| 190485.XCC3451 | (+) | plastid | |||
| 190485.XCC3515 | + | ||||
| 190485.XCC0834 | + | ||||
| 190485.XCC1412 | (+) | plastid | |||
| 190485.XCC3124 | PF13683 | ||||
| 190485.XCC3123 | (PF01527) | ||||
| 190485.XCC2314 | + | ||||
| 190485.XCC3272 | + | ||||
| 190485.XCC4049 | (+) | (mitochondrial) | |||
| 190485.XCC2868 | + | ||||
| 190485.XCC1985 | + | ||||
| 190485.XCC4043 | + | ||||
| 190485.XCC2990 | + | ||||
| 190485.XCC2446 | + | ||||
| 190485.XCC1364 | (+) | (plastid) | |||
| 190485.XCC1362 | + | ||||
| 190485.XCC1361 | + | ||||
| 190485.XCC1360 | + | ||||
| 190485.XCC3078 | (+) | (plastid) | |||
| 190485.XCC0352 | (+) | plastid | |||
| 190485.XCC3479 | + | ||||
| 190485.XCC0167 | + | ||||
| 190485.XCC2713 | + | ||||
| 190485.XCC2269 | + | ||||
| 190485.XCC0574 | + | ||||
| 190485.XCC1089 | + | ||||
| 190485.XCC2685 | + | ||||
| 190485.XCC3022 | + | ||||
| 190485.XCC2049 | PF01609 | ||||
| 190485.XCC1798 | PF01609 | ||||
| 190485.XCC1796 | (PF01527) | ||||
| 190485.XCC3481 | (PF01527) | ||||
| 190485.XCC3203 | (>) | ||||
| 190485.XCC2443 | + | ||||
| 190485.XCC4074 | (+) | plastid | |||
| 190485.XCC2853 | (+) | (plastid) | |||
| 190485.XCC2857 | + | ||||
| 190485.XCC4110 | (PF10013) | not used | |||
| 190485.XCC0170 | + | ||||
| 190485.XCC1317 | + | not used | |||
| 190485.XCC0363 | (+) | (ER) | |||
| 190485.XCC1766 | + | ||||
| 190485.XCC1163 | (+) | (PF07720) | |||
| 190485.XCC3551 | + | ||||
| 190485.XCC1097 | + | ||||
| 190485.XCC2523 | + | ||||
| 190485.XCC2525 | (>) | ||||
| 190485.XCC2039 | + | ||||
| 190485.XCC3496 | PF13276 | ||||
| 190485.XCC3495 | (PF01527) | ||||
| 190485.XCC3329 | + | ||||
| 190485.XCC3141 | + | ||||
| 190485.XCC3140 | PF13683 | ||||
| 190485.XCC3145 | + | ||||
| 190485.XCC4069 | (>) | ||||
| 190485.XCC1109 | + | ||||
| 190485.XCC1631 | + | ||||
| 190485.XCC0354 | + | ||||
| 190485.XCC1947 | + | ||||
| 190485.XCC1899 | PF01609 | ||||
| 190485.XCC1898 | + | ||||
| 190485.XCC1892 | + | ||||
| 190485.XCC3706 | + | ||||
| 190485.XCC0374 | (PF01163) | ||||
| 190485.XCC1232 | (+) | plastid | |||
| 190485.XCC2609 | + | ||||
| 190485.XCC1072 | + | ||||
| 190485.XCC2548 | (>) | ||||
| 190485.XCC3319 | + | ||||
| 190485.XCC1448 | PF01609 | ||||
| 190485.XCC3774 | (+) | ||||
| 190485.XCC3740 | (+) | ||||
| 190485.XCC1930 | (+) | ||||
| 190485.XCC1938 | (+) | ||||
| 190485.XCC1939 | (+) | ||||
| 190485.XCC0156 | (+) | ||||
| 190485.XCC1848 | (+) | ||||
| 190485.XCC1846 | (+) | ||||
| 190485.XCC1337 | (+) | ||||
| 190485.XCC1332 | (+) | ||||
| 190485.XCC1205 | (+) | ||||
| 190485.XCC0672 | (+) | ||||
| 190485.XCC2788 | (+) | ||||
| 190485.XCC0571 | (+) | ||||
| 190485.XCC0634 | (+) | ||||
| 190485.XCC1343 | (+) | ||||
| 190485.XCC2165 | (+) | ||||
| 190485.XCC0891 | (+) | ||||
| 190485.XCC3762 | (+) | ||||
| 190485.XCC0942 | (+) | ||||
| 190485.XCC4087 | (+) | ||||
| 190485.XCC4080 | (+) | ||||
| 190485.XCC2821 | (+) | ||||
| 190485.XCC3502 | (+) | ||||
| 190485.XCC0404 | (+) | ||||
| 190485.XCC2319 | (+) | ||||
| 190485.XCC2179 | (+) | ||||
| 190485.XCC1465 | (+) | ||||
| 190485.XCC3809 | (+) | ||||
| 190485.XCC1664 | (+) | ||||
| 190485.XCC0508 | (+) | ||||
| 190485.XCC1865 | (+) | ||||
| 190485.XCC1268 | (+) | ||||
| 190485.XCC0435 | (+) | ||||
| 190485.XCC3986 | (+) | ||||
| 190485.XCC3982 | (+) | ||||
| 190485.XCC1699 | (+) | ||||
| 190485.XCC1056 | (+) | ||||
| 190485.XCC1050 | (+) | ||||
| 190485.XCC1059 | (+) | ||||
| 190485.XCC2565 | (+) | ||||
| 190485.XCC2763 | (+) | ||||
| 190485.XCC2760 | (+) | ||||
| 190485.XCC1582 | (+) | ||||
| 190485.XCC1472 | (+) | ||||
| 190485.XCC3569 | (+) | ||||
| 190485.XCC3183 | (+) | ||||
| 190485.XCC2617 | (+) | ||||
| 190485.XCC3695 | (+) | ||||
| 190485.XCC3697 | (+) | ||||
| 190485.XCC1901 | (+) | ||||
| 190485.XCC0182 | (+) | ||||
| 190485.XCC2978 | (+) | ||||
| 190485.XCC2972 | (+) | ||||
| 190485.XCC0335 | (+) | ||||
| 190485.XCC1270 | (+) | ||||
| 190485.XCC4180 | (+) | ||||
| 190485.XCC1110 | (+) | ||||
| 190485.XCC1088 | (+) | ||||
| 190485.XCC1060 | (+) | ||||
| 190485.XCC1067 | (+) | ||||
| 190485.XCC2578 | (+) | ||||
| 190485.XCC2371 | (+) | ||||
| 190485.XCC0939 | (+) | ||||
| 190485.XCC2118 | (+) | ||||
| 190485.XCC1649 | (+) | ||||
| 190485.XCC1640 | (+) | ||||
| 190485.XCC3225 | (+) | ||||
| 190485.XCC3645 | (+) | ||||
| 190485.XCC0195 | (+) | ||||
| 190485.XCC2902 | (+) | ||||
| 190485.XCC2904 | (+) | ||||
| 190485.XCC1800 | (+) | ||||
| 190485.XCC1805 | (+) | ||||
| 190485.XCC2540 | (+) | ||||
| 190485.XCC2349 | (+) | ||||
| 190485.XCC2120 | (+) | ||||
| 190485.XCC3505 | (+) | ||||
| 190485.XCC0850 | (+) | ||||
| 190485.XCC2630 | (+) | ||||
| 190485.XCC3811 | (+) | ||||
| 190485.XCC0188 | (+) | ||||
| 190485.XCC1818 | (+) | ||||
| 190485.XCC3886 | (+) | ||||
| 190485.XCC1253 | (+) | ||||
| 190485.XCC1252 | (+) | ||||
| 190485.XCC4055 | (+) | ||||
| 190485.XCC0282 | (+) | ||||
| 190485.XCC3923 | (+) | ||||
| 190485.XCC1002 | (+) | ||||
| 190485.XCC3869 | (+) | ||||
| 190485.XCC3862 | (+) | ||||
| 190485.XCC2750 | (+) | ||||
| 190485.XCC3784 | (+) | ||||
| 190485.XCC1510 | (+) | ||||
| 190485.XCC0714 | (+) | ||||
| 190485.XCC0712 | (+) | ||||
| 190485.XCC3240 | (+) | ||||
| 190485.XCC1534 | (+) | ||||
| 190485.XCC3396 | (+) | ||||
| 190485.XCC2454 | (+) | ||||
| 190485.XCC1399 | (+) | ||||
| 190485.XCC0064 | (+) | not used | |||
| 190485.XCC3899 | (+) | ||||
| 190485.XCC0276 | (+) | ||||
| 190485.XCC2724 | (+) | ||||
| 190485.XCC4189 | (+) | ||||
| 190485.XCC3902 | (+) | ||||
| 190485.XCC0496 | (+) | ||||
| 190485.XCC0725 | (+) | ||||
| 190485.XCC3093 | (+) | ||||
| 190485.XCC3095 | (+) | ||||
| 190485.XCC2030 | (+) | ||||
| 190485.XCC2936 | (+) | ||||
| 190485.XCC2201 | (+) | ||||
| 190485.XCC3533 | (+) | ||||
| 190485.XCC3339 | (+) | ||||
| 190485.XCC0268 | (+) | ||||
| 190485.XCC3497 | (+) | ||||
| 190485.XCC3324 | (+) | ||||
| 190485.XCC2731 | (+) | ||||
| 190485.XCC1735 | (+) | ||||
| 190485.XCC0488 | (+) | ||||
| 190485.XCC2426 | (+) | ||||
| 190485.XCC2398 | (+) | ||||
| 190485.XCC1600 | (+) | ||||
| 190485.XCC0732 | (+) | ||||
| 190485.XCC0731 | (+) | ||||
| 190485.XCC2644 | (+) | ||||
| 190485.XCC1519 | (+) | ||||
| 190485.XCC0873 | (+) | ||||
| 190485.XCC3976 | (+) | ||||
| 190485.XCC0863 | (+) | ||||
| 190485.XCC3112 | (+) | not used | |||
| 190485.XCC1320 | (+) | ||||
| 190485.XCC3536 | (+) | ||||
| 190485.XCC2893 | (+) | ||||
| 190485.XCC4159 | (+) | ||||
| 190485.XCC1358 | (+) | ||||
| 190485.XCC1030 | (+) | ||||
| 190485.XCC4213 | (+) | ||||
| 190485.XCC2410 | (+) | ||||
| 190485.XCC1612 | (+) | ||||
| 190485.XCC0747 | (+) | ||||
| 190485.XCC2674 | (+) | ||||
| 190485.XCC3105 | (+) | ||||
| 190485.XCC3100 | (+) | ||||
| 190485.XCC2503 | (+) | ||||
| 190485.XCC4026 | (+) | ||||
| 190485.XCC4124 | (+) | ||||
| 190485.XCC0108 | (+) | ||||
| 190485.XCC3494 | (+) | ||||
| 190485.XCC3088 | (+) | ||||
| 190485.XCC1323 | (+) | ||||
| 190485.XCC3829 | (+) | ||||
| 190485.XCC1750 | (+) | ||||
| 190485.XCC2409 | (+) | ||||
| 190485.XCC2402 | (+) | ||||
| 190485.XCC2086 | (+) | ||||
| 190485.XCC2704 | (+) | ||||
| 190485.XCC1326 | (+) | ||||
| 190485.XCC2705 | (+) | ||||
| 190485.XCC2702 | (+) | ||||
| 190485.XCC3625 | (+) | ||||
| 190485.XCC1063 | (+) | ||||
| 190485.XCC3132 | (+) | ||||
| 190485.XCC1998 | (+) | ||||
| 190485.XCC0530 | (+) | ||||
| 190485.XCC0237 | (+) | ||||
| 190485.XCC1370 | (+) | ||||
| 190485.XCC1375 | (+) | ||||
| 190485.XCC0343 | (+) | ||||
| 190485.XCC2022 | (+) | ||||
| 190485.XCC2273 | (+) | ||||
| 190485.XCC0691 | (+) | ||||
| 190485.XCC2478 | (+) | ||||
| 190485.XCC2479 | (+) | ||||
| 190485.XCC2472 | (+) | ||||
| 190485.XCC2471 | (+) | ||||
| 190485.XCC0761 | (+) | ||||
| 190485.XCC3514 | (+) | ||||
| 190485.XCC0831 | (+) | ||||
| 190485.XCC1417 | (+) | ||||
| 190485.XCC1416 | (+) | ||||
| 190485.XCC1413 | (+) | ||||
| 190485.XCC2676 | (+) | ||||
| 190485.XCC1969 | (+) | ||||
| 190485.XCC4046 | (+) | ||||
| 190485.XCC2999 | (+) | ||||
| 190485.XCC1834 | (+) | ||||
| 190485.XCC3802 | (+) | ||||
| 190485.XCC1173 | (+) | ||||
| 190485.XCC1502 | (+) | ||||
| 190485.XCC0772 | (+) | ||||
| 190485.XCC0775 | (+) | ||||
| 190485.XCC1082 | (+) | ||||
| 190485.XCC2267 | (+) | ||||
| 190485.XCC3024 | (+) | ||||
| 190485.XCC2717 | + | ||||
| 190485.XCC2716 | (+) | ||||
| 190485.XCC3488 | (+) | ||||
| 190485.XCC3487 | (+) | ||||
| 190485.XCC1950 | (+) | ||||
| 190485.XCC1955 | (+) | ||||
| 190485.XCC0950 | (+) | ||||
| 190485.XCC4205 | (+) | ||||
| 190485.XCC3924 | (+) | ||||
| 190485.XCC1315 | (+) | ||||
| 190485.XCC3341 | (+) | ||||
| 190485.XCC1762 | (+) | ||||
| 190485.XCC3934 | (+) | ||||
| 190485.XCC2328 | (+) | ||||
| 190485.XCC0548 | (+) | ||||
| 190485.XCC2218 | (+) | ||||
| 190485.XCC2522 | (+) | ||||
| 190485.XCC1543 | (+) | ||||
| 190485.XCC1540 | (+) | ||||
| 190485.XCC1781 | (+) | ||||
| 190485.XCC1782 | (+) | ||||
| 190485.XCC1438 | (+) | ||||
| 190485.XCC3528 | (+) | ||||
| 190485.XCC1234 | (+) | ||||
| 190485.XCC2362 | (+) | ||||
| 190485.XCC2337 | (+) | ||||
| 190485.XCC2449 | (+) | ||||
| 190485.XCC2023 | (+) | ||||
| 190485.XCC1091 | (+) | ||||
| 190485.XCC0683 | (+) | ||||
| 190485.XCC1214 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.1 (11/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.9 (9/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.5 (4/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.1 (11/10 KEGG proteins)
Estimated copy number = 0.9 (9/10 KEGG proteins)
Estimated copy number = 0.5 (4/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
