Metamenu

Effective results for Nitrosomonas europaea ATCC 19718 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 72 proteins (56 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
228410.NE2108(PF13276) PF00665mitochondrial
228410.NE2155(PF13276) PF00665mitochondrial
228410.NE2515(PF13276) PF00665mitochondrial
228410.NE0451(PF13276) PF00665mitochondrial
228410.NE1995(PF13276) PF00665mitochondrial
228410.NE2532(PF13276) PF00665mitochondrial
228410.NE1271(PF13276) PF00665mitochondrial
228410.NE0708(PF13276) PF00665mitochondrial
228410.NE1261(PF13276) PF00665mitochondrial
228410.NE1816(PF13276) PF00665mitochondrial
228410.NE0253(PF13276) PF00665mitochondrial
228410.NE1238(PF03098)ER
228410.NE2028PF00665(mitochondrial); (plastid)
228410.NE0517PF00665(mitochondrial); (plastid)
228410.NE0340PF00665(mitochondrial); (plastid)
228410.NE2483PF00665(mitochondrial); (plastid)
228410.NE2012PF00665(mitochondrial); (plastid)
228410.NE0083(PF13436)ER
228410.NE0562PF00665(mitochondrial); (plastid)
228410.NE1940PF00665(mitochondrial); (plastid)
228410.NE1790(PF14397)mitochondrial
228410.NE2143(PF00163)(mitochondrial)
228410.NE0935PF00665(mitochondrial); (plastid)
228410.NE2513(PF11523)(mitochondrial)
228410.NE0454PF00665(mitochondrial); (plastid)
228410.NE2536PF00665(mitochondrial); (plastid)
228410.NE1843PF00665(mitochondrial); (plastid)
228410.NE0714PF00665(mitochondrial); (plastid)
228410.NE0900(PF13436)ER
228410.NE2411PF00665(mitochondrial); (plastid)
228410.NE0244PF00665(mitochondrial); (plastid)
228410.NE1061PF00665(mitochondrial); (plastid)
228410.NE0288PF00665(mitochondrial); (plastid)
228410.NE0297(PF14397)(mitochondrial)
228410.NE1351PF00665 PF13551
228410.NE0188PF00665 PF13551
228410.NE0162PF00665 PF13551
228410.NE1378PF00665 PF13551
228410.NE0155(PF13276) PF00665
228410.NE1760PF00665 PF13551
228410.NE1178PF00665 PF13551
228410.NE2228PF00665 PF13551
228410.NE1880PF00665 PF13551
228410.NE0939PF00665 PF13551
228410.NE2232PF00665 PF13551
228410.NE1523PF00665 PF13551
228410.NE1845PF00665 PF13551
228410.NE1840PF00665 PF13551
228410.NE0268PF00665 PF13551
228410.NE1444PF04733(ER)
228410.NE1507(PF03092)(ER)
228410.NE2414PF00665 PF13551
228410.NE1264PF00665 PF13551
228410.NE0239PF00665 PF13551
228410.NE1675PF00665 PF13551
228410.NE0814PF00665 PF13551
228410.NE1925PF00665 PF13551
228410.NE0254PF00665 PF13551
228410.NE2445PF00665 PF13551
228410.NE2442PF00665 PF13551
228410.NE1245(PF00050)(ER)
228410.NE1239(PF00305)
228410.NE1348PF00665
228410.NE1347PF13551
228410.NE2038(PF03098)
228410.NE1214(PF00862)
228410.NE1366PF13551
228410.NE0425(PF00163)
228410.NE1791(PF14397)
228410.NE2097PF00665
228410.NE1240(PF03098)
228410.NE0281(PF12483)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================