Effective results for Pseudoalteromonas sp. SM9913 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 34 proteins (3 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
234831.PSM_A0019				(PF13202) PF00036	ER
234831.PSM_A0021				(PF13202) PF00036	ER
234831.PSM_A1389				(PF13127)	ER
234831.PSM_A0018				(PF13202)	ER; (ER)
234831.PSM_B0373				(PF00883)	(mitochondrial); (plastid)
234831.PSM_B0418				(PF16187)	ER
234831.PSM_A0020				(PF13202)	ER; (ER)
234831.PSM_A1563				(PF01117)	ER
234831.PSM_A1365				(PF13202)	ER
234831.PSM_A1085				(PF13202)	ER
234831.PSM_A1086				(PF13202)	ER
234831.PSM_A1087				(PF13202)	ER
234831.PSM_A2445				PF10591	ER
234831.PSM_A1515				(PF00883)	ER
234831.PSM_A1129				(PF09317)	ER
234831.PSM_A1101				(PF09317)	ER
234831.PSM_B0114				(PF13582)	(mitochondrial)
234831.PSM_A1236				(PF06315)	(mitochondrial)
234831.PSM_A2385				(PF07693)
234831.PSM_A2477				(PF12576)
234831.PSM_B0445				(PF09317)
234831.PSM_A0687				(PF00883)
234831.PSM_B0321				(PF10354)
234831.PSM_A2450				(PF00883)
234831.PSM_A2032				(PF13661)
234831.PSM_A2443				(PF13202)
234831.PSM_A3016				(PF11969)
234831.PSM_A0634				(PF00883)
234831.PSM_A1042				(PF16187)
234831.PSM_A1686				(PF06315)
234831.PSM_A2619				(PF07693)
234831.PSM_A1643				(PF02460)
234831.PSM_B0166				(PF13875)	not used
234831.PSM_A3092				(PF07693)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================