Effective results for Acidithiobacillus ferrooxidans ATCC 23270 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 34 proteins (2 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
243159.AFE_0888				(PF01906)	mitochondrial; (mitochondrial)
243159.AFE_0507				(PF02899)	(mitochondrial)
243159.AFE_2397				(PF02899)	(mitochondrial)
243159.AFE_0835				(PF02899)	(mitochondrial)
243159.AFE_0859				(PF14721)	ER
243159.AFE_3051				(PF00016) (PF02788)
243159.AFE_1691				(PF00016) (PF02788)
243159.AFE_0509				(PF02899)	(ER)
243159.AFE_1551				(PF00862)	(ER)
243159.AFE_2155				(PF00016) (PF02788)
243159.AFE_2399				(PF02899)	(ER)
243159.AFE_0833				(PF02899)	(ER)
243159.AFE_2746				(PF02899)
243159.AFE_2788				(PF01906)
243159.AFE_2253				(PF07678)
243159.AFE_2019				(PF01906)
243159.AFE_2018				(PF01906)
243159.AFE_3052				(PF00101)
243159.AFE_0434				(PF00016)
243159.AFE_1690				(PF00101)
243159.AFE_1321				(PF01906)
243159.AFE_2869				(PF01597)
243159.AFE_3202				(PF02823)
243159.AFE_0980				(PF01597)
243159.AFE_2850				(PF02899)
243159.AFE_0758				(PF02823)
243159.AFE_2442				PF14712
243159.AFE_1145				(PF02899)
243159.AFE_2549				(PF01597)
243159.AFE_2547				(PF01597)
243159.AFE_1552				(PF00862)
243159.AFE_2423				(PF02823)
243159.AFE_1197				(PF14216)
243159.AFE_0591				PF11331

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================