Effective results for Methylobacillus flagellatus KT (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 34 proteins (0 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
265072.Mfla_1031				(PF13507)	(mitochondrial)
265072.Mfla_1018				(PF00163)	(mitochondrial)
265072.Mfla_2314				(PF01011)	ER
265072.Mfla_0874				(PF00163)	(mitochondrial)
265072.Mfla_1451				(PF01011)	ER
265072.Mfla_0285				(PF07650)	(mitochondrial)
265072.Mfla_1084				(PF01963)	ER
265072.Mfla_1717				(PF01011)	ER
265072.Mfla_0940				(PF01963)	ER
265072.Mfla_0887				(PF13507)	(mitochondrial)
265072.Mfla_0344				(PF01011)	ER
265072.Mfla_2596				(PF13436)	ER
265072.Mfla_2044				(PF01011)	ER; (ER)
265072.Mfla_1106				(PF06026)
265072.Mfla_1008				(PF07650)
265072.Mfla_1007				(PF14622)
265072.Mfla_1004				(PF06421)
265072.Mfla_1654				(PF00215)
265072.Mfla_0898				(PF04305)
265072.Mfla_1067				(PF00215)
265072.Mfla_0250				(PF00215)
265072.Mfla_0111				(PF13875)
265072.Mfla_1042				(PF04305)
265072.Mfla_0129				(PF06026)
265072.Mfla_0864				(PF07650)
265072.Mfla_0863				(PF14622)
265072.Mfla_0860				(PF06421)
265072.Mfla_1085				(PF01963)
265072.Mfla_0928				(PF02224)
265072.Mfla_0923				(PF00215)
265072.Mfla_0941				(PF01963)
265072.Mfla_1283				(PF07701)
265072.Mfla_0962				(PF06026)
265072.Mfla_1072				(PF02224)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================