Effective results for Mesorhizobium loti MAFF303099 (eggnog40)

Summary

Number of putative secreted proteins: 936
- Predicted by EffectiveT3: 205 (high confidence), 320 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 17 before, 45 behind expected region 25..70aa
- Predicted by T4SEpre: 114
- Predicted by EffectiveELD: 50 eukaryotic-like domains, contained in 277 proteins (8 high, 269 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
266835.mlr8222			+	(PF14295) (PF00024)	(mitochondrial)
266835.mll2449				(PF08669) (PF16350) (PF01571)	(ER)
266835.mll1517				(PF08669) (PF16350) (PF01571)	ER
266835.mlr1213				(PF08669) (PF16350) (PF01571)	(ER)
266835.mll1653				(PF08669) (PF16350) (PF01571)	ER
266835.mlr1804		(>)		(PF00656)	ER
266835.mll3108				(PF08669) (PF01571)	mitochondrial
266835.mll5970				(PF00557) (PF01321)	mitochondrial; (mitochondrial)
266835.mll4204			+	(PF13407)	ER
266835.mll0134		(>)		(PF01757)	ER; (ER)
266835.mlr8031	+	(<)		(PF01757)
266835.mlr6027				(PF00557) (PF01321)	(ER)
266835.mlr2938	+	(>)			(mitochondrial); plastid
266835.mll5369				(PF08669) (PF16350) (PF01571)	(mitochondrial)
266835.mll5367			+	(PF01633)	(ER)
266835.mlr1214				(PF00557) (PF01321)	mitochondrial
266835.mll7312	+				ER; (ER)
266835.mll6696				(PF01068)	(mitochondrial)
266835.mll7073				(PF03098)	mitochondrial
266835.mll3407				(PF13407)	ER
266835.mll6064				(PF02371)	(mitochondrial); mitochondrial
266835.mll7336				(PF01757)	ER; (ER)
266835.mll7337				(PF01757)	ER
266835.mll2776			+		(ER)
266835.mlr6992			+		ER
266835.mlr3463				(PF00656)	ER
266835.mlr1316				(PF04191)	ER
266835.mll1771	+				(mitochondrial)
266835.mll0946			+		mitochondrial
266835.mll1012				(PF13407)	ER
266835.mll5049	+				(ER)
266835.msr1776		+			(mitochondrial)
266835.mll0962				(PF01757)	mitochondrial
266835.mll1692				(PF13407)	ER
266835.mlr2925	+				mitochondrial; plastid
266835.mll1508				(PF13407)	mitochondrial
266835.mll7151				(PF08402)	(mitochondrial)
266835.mll4454				(PF04191)	(mitochondrial)
266835.mll1716				(PF08402)	mitochondrial
266835.mll3713				(PF13407)	ER
266835.mll2655				(PF00050) (PF07648)	(ER)
266835.mll7863		+			ER
266835.mlr1826			+		ER
266835.mlr7288				(PF13407)	ER
266835.mlr3300				(PF00656)	mitochondrial
266835.mll7668				(PF13407)	ER
266835.mlr8490				(PF08402)	(mitochondrial)
266835.mll7082				(PF13407)	ER
266835.mll5285				(PF01757)	(ER)
266835.msr1111			+		mitochondrial
266835.mll4997				(PF13407)	(mitochondrial)
266835.mll4996				(PF13407)	ER
266835.mlr5740				(PF13407)	ER
266835.msr3371				(PF04828)	(ER)
266835.mlr7938		+			mitochondrial
266835.mlr3358	+				(mitochondrial); plastid
266835.mlr8128		(>)			ER
266835.mlr1864	+				(mitochondrial)
266835.mlr7138		(>)			(mitochondrial)
266835.msr8429		(<)			ER
266835.mlr7482				(PF00656)	ER
266835.mll5669				(PF01757)	ER
266835.mlr7625				(PF13407)	ER
266835.mlr3334				(PF13407)	(mitochondrial)
266835.mll3541				(PF07045)	mitochondrial
266835.mlr6144				(PF01757)	mitochondrial
266835.mlr6490				(PF04191)	(mitochondrial); (ER)
266835.mll3219		+			ER
266835.mlr8413		+			(ER); ER
266835.mll5956				(PF02899)	ER; (ER)
266835.mlr7697		+			ER
266835.mlr4337				(PF06764)	ER
266835.mll3585		+			ER
266835.mlr2105				(PF04120)	(ER)
266835.mlr6758	(+)			(PF01757)	(mitochondrial); (plastid)
266835.mlr0198	+				(mitochondrial)
266835.mlr6294				(PF07364) (PF07171)	(mitochondrial)
266835.mll5706				(PF13407)	ER
266835.mlr5375		(>)			ER
266835.mlr2550				(PF04191)	ER
266835.mll4959		+			mitochondrial
266835.mll5804		(>)			mitochondrial; (mitochondrial)
266835.mlr1535				(PF00557) (PF01321)	(mitochondrial)
266835.mlr8032				(PF01757)	ER
266835.mlr1280				(PF08669) (PF16350) (PF01571)
266835.mlr1283				(PF08669) (PF16350) (PF01571)
266835.mlr7876			+		(mitochondrial)
266835.mlr2160		(<)			ER
266835.mll3198			+		ER
266835.mll4353				(PF04191)	mitochondrial
266835.mlr7582				(PF13407)	ER
266835.mlr7004				(PF08402)	mitochondrial
266835.mlr1890				(PF13407)	ER
266835.mlr8217				(PF13407)	(ER)
266835.mlr8076				(PF04120)	(ER)
266835.mll1004				(PF13407)	ER
266835.mlr5559		(>)			(mitochondrial)
266835.mll7366				(PF13407)	ER
266835.mll5768				(PF13407)	ER
266835.mll7376				(PF13407)	ER
266835.mll1725				(PF13407)	ER
266835.mlr2939	+				(mitochondrial); plastid
266835.mll3499				(PF08402)	(mitochondrial)
266835.mll4147		(>)			ER
266835.msl5852		(<)			mitochondrial; (mitochondrial)
266835.mlr2439				(PF13407)	ER
266835.mll1258				(PF08669) (PF16350) (PF01571)
266835.mll1257	+				(mitochondrial)
266835.mll1871				(PF05368)	(mitochondrial)
266835.mll6730		+			(ER)
266835.mll3709			+		ER
266835.mlr0777			+		ER
266835.mlr0550	+				ER; (ER)
266835.mlr8385				(PF05686)	mitochondrial
266835.mll0095			+		ER
266835.mll3729		(>)			ER
266835.mlr1663				(PF00024)	ER
266835.mlr2366				(PF00656)	ER
266835.mlr4340	+				mitochondrial; (mitochondrial)
266835.mlr0739				(PF01757)	ER
266835.mll4218			+		ER
266835.mlr6802	+				ER
266835.mll5659				(PF13407)	ER
266835.mlr4966				(PF13407)	ER
266835.mll3882			+		ER
266835.mlr2838			+		mitochondrial
266835.mll8567				(PF13407)	ER
266835.mll4023	+				mitochondrial; (mitochondrial)
266835.mlr5683			+		(ER)
266835.mlr4774		+			ER; (ER)
266835.mll7201		(<)			ER
266835.mll2521			+		mitochondrial
266835.mlr8251			+		mitochondrial
266835.mll1990				(PF05368)	(mitochondrial)
266835.mlr6972				(PF01571)	mitochondrial; (mitochondrial)
266835.mlr8322	+				(ER)
266835.mll3670			+		ER
266835.mll2315	+				(ER); (mitochondrial)
266835.mll1355				(PF06455)	ER
266835.mll0183		+			ER
266835.mll7014				(PF13407)	ER
266835.mll7019				(PF13407)	mitochondrial
266835.mll5717	+				mitochondrial; plastid
266835.mlr0376			+		(mitochondrial)
266835.mll2713	+				mitochondrial
266835.mlr6933	+				(ER)
266835.mll4888		+			ER
266835.mlr0492	+				(mitochondrial); (plastid)
266835.mll2256				(PF04752)	mitochondrial
266835.mll6042				(PF02899)	ER; (ER)
266835.mll6045				(PF02899)	(mitochondrial)
266835.mlr0954				(PF00557)	(plastid)
266835.mll5257	(+)				mitochondrial
266835.mlr3749	+				(mitochondrial)
266835.mll3405	+	(>)
266835.mlr5994			+	(PF02371)
266835.msr5978	(+)				mitochondrial
266835.msl1109	(+)				(mitochondrial); plastid
266835.mll5060				(PF04191)	(ER)
266835.mlr6316			+	(PF02902)
266835.mll2895				(PF07787)	plastid
266835.mlr0883				(PF08669) (PF01571)
266835.mll1204		+		(PF08695)
266835.mll5230				(PF08669) (PF01571)
266835.mlr2927	(+)				mitochondrial; plastid
266835.msr4329	(+)				mitochondrial; (plastid)
266835.mll0907				(PF06241)	(ER)
266835.mll5370	(+)			(PF01633)	(mitochondrial)
266835.mll6578	+				(plastid)
266835.mll4450	(+)				(mitochondrial)
266835.mll0508	(+)				ER; (ER)
266835.mll6499	+				(mitochondrial)
266835.mlr0764	+				(plastid)
266835.mlr2613			+		(ER)
266835.mlr7267		(<)		(PF08402)
266835.mll7605				(PF05368)	(mitochondrial)
266835.mlr2421	(+)				(mitochondrial)
266835.mll5835	(+)	+			(plastid)
266835.msl8611	(+)				mitochondrial
266835.mlr8555			+		(plastid)
266835.mlr3352	+			(PF08975)
266835.mlr3356	+				plastid
266835.mll4699		(>)		(PF01741)
266835.mlr6218				(PF00557) (PF01321)
266835.mll7789				(PF08669) (PF01571)
266835.mlr7132	(+)				mitochondrial
266835.mlr8454				(PF01757)	(plastid)
266835.msl6054	+				(mitochondrial)
266835.mll0159				(PF05990)	(plastid)
266835.mlr7543				(PF08402)	(ER)
266835.mlr3677				(PF08669) (PF01571)
266835.mlr3010				(PF11927)	(ER)
266835.mll2301	+				(plastid)
266835.mlr4143	+			(PF02371)
266835.mlr6774		(>)			(plastid)
266835.mlr1434			+		plastid
266835.mll2321	+			(PF07978)
266835.msl2990	(+)				(mitochondrial)
266835.mlr8570				(PF00557) (PF01321)
266835.msl5425	+				mitochondrial; not used
266835.mll6379			+		(ER)
266835.mll2286	(+)				(mitochondrial)
266835.mlr2124			+	(PF01757)
266835.mll7704	+				(mitochondrial)
266835.mlr4274	+			(PF02371)
266835.mll7017	(+)				(ER); (mitochondrial)
266835.mll2008			+		plastid
266835.mll3299	(+)				(mitochondrial)
266835.mlr6506	+		+
266835.mll7304				(PF08669) (PF01571)
266835.mll7302				(PF08669) (PF01571)
266835.mll6252				(PF00557) (PF01321)
266835.mlr4484	+		+
266835.mll4500				(PF00557) (PF01321)
266835.mlr8052	+		+
266835.mll3789	+				(plastid)
266835.mll0994	+				(plastid)
266835.mlr6323	(+)				ER
266835.mlr5988				(PF07364) (PF07171)
266835.mll7329	(+)				ER
266835.mll8493	(+)				ER
266835.mlr0874	+			(PF04828)
266835.mlr6546	(+)				mitochondrial
266835.mlr2682				(PF00557) (PF01321)
266835.mll1555	(+)				(ER)
266835.mll7123	+			(PF05990)
266835.mlr4790				(PF08669) (PF01571)
266835.mll2416	+				(mitochondrial)
266835.mlr0796			+	(PF01442)
266835.mll5054				(PF04828)	(plastid)
266835.mll3685	(+)				ER
266835.mlr1170				(PF00656)	(plastid)
266835.mlr5692		(>)		(PF01741)
266835.mlr6566	(+)				(mitochondrial); (plastid)
266835.mll7373		(<)	+
266835.mlr4196	+			(PF05899)
266835.mlr4195	+			(PF05899)
266835.mlr4446				(PF00557) (PF01321)
266835.mll4144				(PF07364) (PF07171)
266835.mlr1155	(+)				ER
266835.mlr1156	(+)				ER
266835.mll5362	(+)				mitochondrial
266835.mll3393				(PF00557) (PF01321)
266835.mll3532				(PF04752)	(plastid)
266835.mll1571	+				(plastid)
266835.mll7871	+				plastid
266835.mlr4713		(>)		(PF01741)
266835.mlr7320				(PF08669) (PF01571)
266835.mll6676				(PF07364) (PF07171)
266835.mlr1275				(PF08669) (PF01571)
266835.mlr6673	(+)				(mitochondrial); (plastid)
266835.mll3743		(>)	+
266835.mll0460	+				plastid
266835.mll6306	+		+
266835.mlr6441	(+)				(mitochondrial); (plastid)
266835.mlr0695			+	(PF01757)
266835.mll8561	+				(plastid)
266835.mlr7554	(+)				mitochondrial; (mitochondrial)
266835.mll3081		+			(plastid)
266835.mll2372				(PF00656)	(mitochondrial)
266835.mlr7141				(PF00557) (PF01321)
266835.mlr2245	(+)				(mitochondrial); (plastid)
266835.mlr2302	(+)	+			(plastid)
266835.mll6238				(PF08669) (PF01571)
266835.msl5380	+				(plastid)
266835.mll0106	+				(mitochondrial)
266835.mll7488	(+)				mitochondrial
266835.mlr2918	(+)				(mitochondrial)
266835.mlr5266	(+)				(mitochondrial)
266835.mll4920	+				(plastid)
266835.mll7523	+				(mitochondrial)
266835.mll5591			+		(mitochondrial)
266835.mll7194	(+)				(mitochondrial)
266835.mlr4670	+				plastid
266835.mll6227	(+)				mitochondrial
266835.mlr0239	(+)			(PF05368)	plastid
266835.mlr6095				PF05034 (PF07476)
266835.mlr3575				(PF02899)
266835.mll0246	(+)				(ER)
266835.mll7310	+
266835.msl6060				(PF07364)
266835.mll8441	+
266835.mll8445				(PF08402)
266835.mlr4654	+
266835.mll1918				(PF13407)
266835.msl1803	+
266835.msr6263	(+)				(mitochondrial)
266835.mlr0922		(>)
266835.mll7076	(+)			(PF03098)
266835.msr1062	(+)				(plastid)
266835.mlr0219				(PF04828)
266835.mll0186	+
266835.mll1054		+
266835.mlr2172		(>)
266835.mlr6079				(PF08402)
266835.mll6067				(PF02371)
266835.mlr4225	+
266835.mlr4228				(PF01878)
266835.mlr5505			+
266835.mlr4033	+
266835.mlr0901	(+)		+
266835.mlr6534				(PF08402)
266835.mlr8042				(PF01068)
266835.mll3424	+
266835.mll0212			+
266835.mlr6335	+
266835.mlr5977				(PF02371)
266835.mll7682			+
266835.msl6020				PF05034
266835.mll6881			+
266835.mlr4205	(+)				plastid
266835.mll7623				(PF13407)
266835.mll8486	+
266835.msl7859				(PF07045)
266835.mlr1312	+
266835.mlr3804	(+)				(ER)
266835.mll5471	+
266835.mll0025				(PF04828)
266835.mlr8207	+
266835.mlr5361		+
266835.mlr1783	(+)			(PF04828)
266835.mll4794	+
266835.mll4792	+
266835.mll0232				(PF08402)
266835.mll8748	(+)		+
266835.mlr7801				(PF04828)
266835.mlr7802				(PF04828)
266835.mlr4576	+
266835.mlr6032				(PF02371)
266835.mll6243	+
266835.mll2890				(PF08402)
266835.mll3140				(PF01757)
266835.mll8176				(PF07978)
266835.mll8170	+
266835.mll8353				(PF01757)
266835.mlr2942	+
266835.mlr5134		(<)
266835.mlr6815			+
266835.mll5186	+
266835.mll2950	+
266835.msl1310	+
266835.mll6183	+
266835.mll5238	+
266835.mll5981				(PF02371)
266835.mlr3271	+
266835.mlr8265	+
266835.mlr3058			+
266835.mll4800	(+)				plastid
266835.mll3464	+
266835.mlr5680	+
266835.mll0610	+
266835.mll4473		+
266835.mlr8474	+
266835.mll7820	+
266835.mll7825	(+)				(plastid)
266835.mll0576			+
266835.mll1738				(PF08402)
266835.mlr8243		(<)
266835.mll5770	+
266835.mll4280	+
266835.mlr0569	(+)		+
266835.mll1484		(>)
266835.mll0909				(PF04191)
266835.mlr1935	+
266835.mll6391	(+)				(mitochondrial)
266835.mlr7741	+
266835.mll7157	+
266835.mlr8761	+
266835.mlr8763	(+)				plastid
266835.mlr1379		(>)
266835.msr8579	+
266835.msr8743				PF05830	not used
266835.mll5410	+
266835.mll1711			+
266835.mll3711	+
266835.msl8638				(PF01878)
266835.mll1522	(+)	+
266835.mll1528				(PF04120)
266835.mll4444		(>)
266835.mlr7093	(+)				(mitochondrial)
266835.mlr7099	+
266835.mlr6417	+
266835.mll4385	+
266835.msr3652	(+)				(plastid)
266835.mll5297				(PF08402)
266835.mll5838				(PF13407)
266835.mll2467			+
266835.mll3732			+
266835.mlr5721	+
266835.mll7665	+
266835.mll2104		+
266835.mll2106				(PF04120)
266835.mlr3376		(>)
266835.mll5107				(PF08402)
266835.mll1824	(+)				(plastid)
266835.mlr3587				(PF08402)
266835.mlr7110			+
266835.mll3977		(>)
266835.mll4199	+
266835.mlr5606	(+)				(mitochondrial)
266835.mlr5602		(>)
266835.mll0473	+
266835.mll2830	(+)				(plastid)
266835.mll0690			+
266835.mll5318	(+)				(mitochondrial)
266835.mlr4910			+
266835.mll7643	(+)				(mitochondrial)
266835.mll1125	(+)			(PF01757)
266835.mll2167	+
266835.mlr5192	+
266835.mlr1860	+
266835.mlr7324				(PF11927)
266835.mll4032	+
266835.mlr4749	+
266835.mll3385				(PF08402)
266835.mll6472	+
266835.mlr0308	+
266835.mll4432	+
266835.mll0454	+
266835.mll0455	+
266835.mll0457		(>)
266835.mll0458			+
266835.mlr4683				PF03175
266835.mlr2359			+
266835.mlr8107				(PF01068)
266835.mlr8450	+
266835.mll2148				(PF13407)
266835.msr5733	+
266835.mll4019			+
266835.mlr4761	+
266835.mll0849				(PF08402)
266835.mll0158				(PF05990)
266835.mlr1414				(PF05368)
266835.mlr0328	(+)				(plastid)
266835.mll6628			+
266835.mll6337	+
266835.mlr0662			+
266835.mll5298				(PF08402)
266835.mlr6969	+
266835.mlr6964	(+)				(mitochondrial)
266835.mlr6965				(PF08402)
266835.mll0824				(PF04828)
266835.mll0826	(+)				(ER)
266835.mlr7560		+
266835.mll7213	+
266835.msr3806	+
266835.mlr6770	+
266835.mlr1435			+
266835.mlr8325	+
266835.mlr2279	+
266835.mll0582				PF03452
266835.mll1362		(>)
266835.mlr5848				PF05830
266835.mll5958				(PF02899)
266835.mll1981	+
266835.mll2186	+
266835.mll3276		+
266835.mlr1594	+
266835.mlr6905		(<)
266835.mll1647				(PF04752)
266835.mlr5218			+
266835.mll3646			+
266835.mlr2631		(<)
266835.msr0466				PF06858
266835.mll6374				(PF02899)
266835.msr6560	+
266835.mll3076	+
266835.mll4709	(+)	(>)
266835.mll4705				(PF01068)
266835.mlr1710				(PF02371)
266835.mll0136			+
266835.mlr4872	+
266835.mlr4873	+
266835.mll5566	+
266835.msl3456		+			not used
266835.mlr6547			+
266835.mll4523		+
266835.mll4304			+
266835.mlr2758	(+)		+
266835.mll3065				(PF08402)
266835.mll6012	(+)				(plastid)
266835.mll2493			+
266835.mlr0979			+
266835.mlr0978	+
266835.mll7047				(PF05899)
266835.mll7044			+
266835.mll4541	+
266835.mlr7387				(PF08402)
266835.mlr7380	(+)				(plastid)
266835.mlr8018		+
266835.msl8734	+
266835.mlr4818	+
266835.mlr4819	+
266835.mll1068	+
266835.mll1601				(PF04828)
266835.mll6053				(PF02371)
266835.mll6059				(PF07171)
266835.mlr7916	+
266835.mll7187	(+)			(PF08402)
266835.mlr1941				(PF01757)
266835.mlr1050			+
266835.mll5809			+
266835.mll5803	(+)				(plastid)
266835.mll0074				(PF01757)
266835.mll1003	+
266835.mlr7674				(PF08402)
266835.mll3030	+
266835.mlr6509	+
266835.mlr3755				(PF05988)
266835.mll4748		(<)
266835.mll2248	(+)			(PF01757)
266835.mll3378	(+)			(PF08402)
266835.mll7303	+
266835.mlr4237			+
266835.mll6255				(PF08402)
266835.mll5481				(PF01068)
266835.mll2902		(>)
266835.msl4750				(PF07045)
266835.mlr5354	+
266835.mll4503	+
266835.mll7476	(+)			(PF04828)
266835.mll1022			+
266835.mlr6324				PF04184
266835.mlr5983				(PF02371)
266835.mlr6063				(PF02371)
266835.mlr6069				(PF02371)
266835.msr8629	(+)				(mitochondrial)
266835.mll3314				(PF08402)
266835.mll3315	+
266835.mll6896	+
266835.mlr4215				(PF07978)
266835.mll8364	+
266835.mll4533				(PF06764)
266835.mlr6550		(<)
266835.mlr1895				(PF05368)
266835.mll1656			+
266835.mll2963	(+)				(plastid)
266835.mlr0875		+
266835.mlr0877	+
266835.msl3206				(PF01878)
266835.msl0897	+				not used
266835.mlr5379	+
266835.mlr2687	+
266835.mlr1135		(>)
266835.mlr5965				(PF02371)
266835.mlr7906	(+)				(plastid)
266835.mll6524			+
266835.mll7349	+
266835.mlr0071		(>)
266835.mll8340		(<)
266835.mll1820	+
266835.mll5190				(PF00656)
266835.mlr5550			+
266835.mll0014			+
266835.mll2946				(PF05899)
266835.mll2947		(>)
266835.mll2948				(PF08402)
266835.mlr2025				(PF08402)
266835.msl2015	+				not used
266835.mlr8270		+
266835.mlr4404		(>)
266835.mlr7818	+
266835.mll1682				(PF13407)
266835.mlr5944	(+)				(mitochondrial)
266835.mlr6798	+
266835.mll2088	+
266835.mlr7777	(+)				(plastid)
266835.mll2627	(+)				(plastid)
266835.mll2622		(>)
266835.mll7360				(PF13407)
266835.mlr3797		+
266835.mlr8253			+
266835.msl6205	+
266835.mlr4428			+
266835.mlr6342	+
266835.mll5705	+
266835.mll4604				(PF07978)
266835.mll4606				(PF01068)
266835.mlr8757				(PF01757)
266835.mll4859				(PF04828)
266835.mlr4197				(PF05899)
266835.mlr4194		(>)
266835.mlr4193				(PF08402)
266835.mlr0571		(>)
266835.mll4141				(PF02371)
266835.mll2848	+
266835.msr6318	+
266835.mlr4290				(PF02899)
266835.mll3824	(+)				(mitochondrial)
266835.mll5862	(+)	+
266835.mll5179	+
266835.mll1876				(PF05988)
266835.mll6733		+
266835.mll7468		(>)
266835.mlr2957		(>)
266835.mlr3608				(PF04828)
266835.mlr1609			+
266835.mlr6386		(>)
266835.mlr2389			+
266835.msl6526	+
266835.mlr3167	+
266835.mlr6403			+
266835.mll5116	+
266835.msr8689	+				not used
266835.mll1854				(PF07045)
266835.mll8063				(PF01068)
266835.mlr0112				(PF04828)
266835.mlr5752	+
266835.mlr5639	+
266835.mll5328	+
266835.mll0665			+
266835.mlr5305	(+)				(plastid)
266835.msr3621	(+)				(mitochondrial)
266835.msr4160	+
266835.mlr7339	(+)		+
266835.mll5131				(PF05899)
266835.mll5795	+
266835.mll6112				(PF02371)
266835.mlr3645				(PF08402)
266835.mll0464	+
266835.mll0685	+
266835.mll7653			+
266835.mlr6190				(PF02371)
266835.mlr8130	(+)		+
266835.mll2689	+
266835.mll4680				(PF01757)
266835.mll8568		(>)
266835.mlr6203	+
266835.mlr7559		+
266835.mlr4111	(+)				(plastid)
266835.mlr4110			+
266835.mlr3666				(PF08402)
266835.mlr3662		+
266835.mlr0312	+
266835.mll0443	+
266835.mll2578	+
266835.mlr7495			+
266835.mlr2813		(<)
266835.mll1210		(>)
266835.mlr4772	+
266835.mlr4779				(PF08402)
266835.mll0833		(>)
266835.mll0167			+
266835.mll2522				(PF05988)
266835.mlr7143				(PF01757)
266835.mlr7142	+
266835.mlr5225	(+)				(plastid)
266835.mlr2795		(<)
266835.mll5769	+
266835.mll6233	+
266835.mlr3303				(PF00656)
266835.mll7564	(+)				(plastid)
266835.mll3876	+
266835.mll3593				(PF05899)
266835.mll3595	+
266835.mll3596				(PF13407)
266835.mll3598	+
266835.mlr8466				(PF05899)
266835.mlr6973				(PF08669)
266835.mll0760		+
266835.mll5083	+
266835.mll5087	+
266835.mll5889	+
266835.mlr4152				(PF08402)
266835.mlr7169	+
266835.mlr1911				(PF05988)
266835.mll7983			+
266835.mlr6178	+
266835.msl4171	+				not used
266835.mlr1585		(>)
266835.mlr5075	+
266835.mll0121		(<)
266835.mlr7537		(>)
266835.mll6001				(PF02371)
266835.mll2077				(PF01068)
266835.mlr3533	+
266835.mlr5262			+
266835.mlr5264	+
266835.mlr1976			+
266835.mlr8455				(PF16387)
266835.mll0352		(>)
266835.mlr0374	+
266835.mll5386				(PF02371)
266835.mlr5871	+
266835.mll5967				(PF02371)
266835.mll5964				(PF02371)
266835.mll1221	+
266835.mll0256	+
266835.mlr0961				(PF01757)
266835.msr0269	(+)				plastid
266835.mlr5013				(PF07045)
266835.mlr6287	(+)				(plastid)
266835.mll2277	(+)				(plastid)
266835.mlr3552	+
266835.mlr7075	(+)				(mitochondrial)
266835.mlr5327	+
266835.mlr5325	+
266835.mll1284				(PF02371)
266835.mll7059	+
266835.mll4880	+
266835.mlr5382				(PF08402)
266835.mll0708				(PF08402)
266835.msr1912	+
266835.mll6228				(PF02899)
266835.mll6598	+
266835.mll1611	(+)				(plastid)
266835.mll6040				(PF02899)
266835.mll6044				(PF02899)
266835.mlr6096			+
266835.mlr2676	(+)
266835.mlr6875	(+)
266835.mll4751	(+)
266835.mlr7591	(+)
266835.mll0983	(+)
266835.mll7330	(+)
266835.mlr0023	(+)
266835.mll8315	(+)
266835.mlr0845	(+)
266835.mll3429	(+)
266835.mll2216	(+)
266835.mll6746	(+)
266835.mlr8209	(+)
266835.msr2443	(+)
266835.mll1545	(+)
266835.mll1549	(+)
266835.mll2090	(+)
266835.mlr1337	(+)
266835.mlr5541	(+)
266835.mll2952	(+)
266835.mlr2012	(+)
266835.mll1207	(+)
266835.msl6763	(+)				not used
266835.mll4118	(+)
266835.msl7485	(+)
266835.mll7390	(+)
266835.mll3694	(+)
266835.mll0579	(+)
266835.mlr4536	(+)
266835.msl0218	(+)				not used
266835.mll6572	(+)
266835.mll6577	(+)
266835.mlr8764	(+)
266835.mll5148	(+)
266835.mlr2052	(+)
266835.mlr5498	(+)
266835.mll3710	(+)
266835.mlr4519	(+)
266835.mlr1499	(+)
266835.mlr7461	(+)
266835.mlr7469	(+)
266835.mll3386	(+)
266835.mll1260	(+)
266835.mll5837	(+)
266835.mll8218	(+)
266835.mlr6390	(+)
266835.mll7660	(+)
266835.mll1106	(+)
266835.msl7423	(+)
266835.mll5815	(+)
266835.mll5813	(+)
266835.mlr0589	(+)
266835.mlr7933	(+)
266835.mlr3351	(+)
266835.mlr3353	(+)
266835.mlr1241	(+)
266835.mlr4740	(+)
266835.mlr6215	(+)
266835.mll5872	(+)
266835.mlr4688	(+)
266835.mll1143	(+)
266835.mll1432	(+)
266835.mll6410	(+)
266835.mlr5597	(+)
266835.mll6621	(+)
266835.mll6624	(+)
266835.mll1168	(+)
266835.mll1160	(+)
266835.mll5614	(+)
266835.mlr0660	(+)
266835.mlr0402	(+)
266835.msl0431	(+)
266835.mlr0347	(+)
266835.mlr5598	(+)
266835.mll6979	(+)
266835.mlr2485	(+)
266835.mll4053	(+)
266835.mll6264	(+)
266835.mlr8432	(+)
266835.mll2702	(+)
266835.mll3253	(+)
266835.mll4707	(+)
266835.mlr1386	(+)
266835.msl0164	(+)
266835.mll4891	(+)
266835.mlr4665	(+)
266835.mlr3281	(+)
266835.mlr4396	(+)
266835.mlr1282	(+)
266835.mll3997	(+)
266835.mll2240	(+)
266835.mll6250	(+)
266835.mlr4641	(+)
266835.msl7881	(+)
266835.msl8075	(+)
266835.mll1455	(+)
266835.mlr6860	(+)
266835.mll0057	(+)
266835.mlr1512	(+)
266835.mlr6529	(+)
266835.mll4505	(+)
266835.mlr6328	(+)
266835.mll8145	(+)
266835.mlr6842	(+)
266835.mlr6849	(+)
266835.mlr0915	(+)
266835.mlr8211	(+)
266835.mll3431	(+)
266835.mll4784	(+)
266835.mll4785	(+)
266835.mlr6308	(+)
266835.mll6520	(+)
266835.mll7127	(+)
266835.mll5193	(+)
266835.mlr5554	(+)
266835.mll7315	(+)
266835.msr7236	(+)
266835.mlr6569	(+)
266835.mlr3047	(+)
266835.mlr0538	(+)
266835.mlr7816	(+)
266835.mll0487	(+)
266835.msr8381	(+)
266835.mlr6361	(+)
266835.mll6500	(+)
266835.mll7812	(+)
266835.mll6996	(+)
266835.msl2076	(+)
266835.msl6202	(+)				not used
266835.msr2651	(+)
266835.mlr5923	(+)
266835.mlr5690	(+)
266835.mll7165	(+)
266835.mlr3049	(+)
266835.mll8382	(+)
266835.mlr6567	(+)
266835.mll7835	(+)
266835.mlr2933	(+)
266835.msr5995	(+)				not used
266835.mlr0752	(+)
266835.mlr1483	(+)
266835.mll1537	(+)
266835.mlr5905	(+)
266835.mll0918	(+)
266835.mll4440	(+)
266835.mlr2437	(+)
266835.mlr4139	(+)
266835.mll2645	(+)
266835.mlr0125	(+)
266835.mll0895	(+)
266835.mlr8540	(+)
266835.mlr7293	(+)
266835.mlr7298	(+)
266835.mll4186	(+)
266835.msr4424	(+)
266835.mll7105	(+)
266835.mll0664	(+)
266835.mlr2363	(+)
266835.mll6677	(+)
266835.mll2118	(+)
266835.mlr8153	(+)
266835.mll7427	(+)
266835.mll3745	(+)
266835.mlr0593	(+)
266835.mlr3913	(+)
266835.mll0469	(+)
266835.mlr4967	(+)
266835.mll5656	(+)
266835.mll6303	(+)
266835.mlr6196	(+)
266835.mlr2839	(+)
266835.mll3558	(+)
266835.mll3556	(+)
266835.mll8565	(+)
266835.mlr4759	(+)
266835.mlr4758	(+)
266835.mlr5402	(+)
266835.mll3944	(+)
266835.mlr3933	(+)
266835.mlr1239	(+)
266835.mll4007	(+)
266835.mll4002	(+)
266835.mll0782	(+)
266835.msr3036	(+)
266835.msl8686	(+)
266835.mlr8256	(+)
266835.mlr2247	(+)
266835.mlr2494	(+)
266835.mll4066	(+)
266835.mll4068	(+)
266835.mlr1749	(+)
266835.mll6426	(+)
266835.mll0107	(+)
266835.mll6284	(+)
266835.msr4930	(+)
266835.mlr2262	(+)
266835.mlr2264	(+)
266835.mlr6174	(+)
266835.mlr3180	(+)
266835.mlr0982	(+)
266835.mll6003	(+)
266835.mlr5268	(+)
266835.mll4929	(+)
266835.mll4372	(+)
266835.mlr0372	(+)
266835.msr8108	(+)
266835.mlr2282	(+)
266835.msr8103	(+)
266835.msr1795	(+)
266835.msr1029	(+)
266835.mll2276	(+)
266835.mll1671	(+)
266835.mll3637	(+)
266835.mlr8538	(+)
266835.mll5901	(+)
266835.mll6900	(+)
266835.mlr2896	(+)
266835.mlr3763	(+)
266835.mll4558	(+)
266835.mll3289	(+)
266835.mlr5039	(+)
266835.mlr8003	(+)
266835.mll5005	(+)
266835.msr8664	(+)				not used
266835.mll2253	(+)
266835.mll1618	(+)
266835.mlr6093	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================