Effective results for Geobacter metallireducens GS-15 (eggnog40)
Summary
Number of putative secreted proteins: 221
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 221 proteins (29 high, 192 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 269799.Gmet_0685 | (PF02754) (PF13237) | ER | |||
| 269799.Gmet_3504 | (PF02310) (PF04055) | (ER) | |||
| 269799.Gmet_0369 | (PF01058) (PF12838) | mitochondrial | |||
| 269799.Gmet_2070 | (PF02754) (PF13237) | (ER) | |||
| 269799.Gmet_1700 | (PF02310) (PF04055) | ER; mitochondrial | |||
| 269799.Gmet_2264 | (PF02754) (PF13237) | (ER) | |||
| 269799.Gmet_1233 | (PF13429) | ER | |||
| 269799.Gmet_0578 | (PF05140) | ER | |||
| 269799.Gmet_0572 | (PF05140) | ER | |||
| 269799.Gmet_1171 | (PF02310) (PF04055) | (ER) | |||
| 269799.Gmet_2596 | (PF01058) | (mitochondrial) | |||
| 269799.Gmet_2267 | (PF02754) | (ER) | |||
| 269799.Gmet_1964 | (PF13429) | ER | |||
| 269799.Gmet_1978 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_1112 | (PF01058) | mitochondrial | |||
| 269799.Gmet_2065 | (PF02754) | ER | |||
| 269799.Gmet_2110 | (PF06792) | (mitochondrial) | |||
| 269799.Gmet_2484 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_1344 | (PF10531) | ER | |||
| 269799.Gmet_1125 | (PF02550) (PF13336) | (mitochondrial) | |||
| 269799.Gmet_0234 | (PF13436) | ER | |||
| 269799.Gmet_2255 | (PF02754) | ER | |||
| 269799.Gmet_2254 | (PF02915) | ER | |||
| 269799.Gmet_0081 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_0085 | (PF03162) | ER | |||
| 269799.Gmet_2707 | (PF01739) | (mitochondrial) | |||
| 269799.Gmet_0229 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_1398 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_3003 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_3481 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_1002 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_2030 | (PF10531) | ER | |||
| 269799.Gmet_0592 | (PF05140) | ER | |||
| 269799.Gmet_0587 | (PF04055) | (mitochondrial) | |||
| 269799.Gmet_0586 | (PF04055) | (mitochondrial) | |||
| 269799.Gmet_1693 | (PF02310) (PF04055) | (plastid) | |||
| 269799.Gmet_0900 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_2184 | (PF10531) | ER | |||
| 269799.Gmet_1527 | (PF02754) | (ER) | |||
| 269799.Gmet_0140 | (PF05140) | ER | |||
| 269799.Gmet_2160 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_1333 | PF01610 | (mitochondrial) | |||
| 269799.Gmet_0305 | (PF16114) (PF08442) | ||||
| 269799.Gmet_3304 | (PF02550) (PF13336) | ||||
| 269799.Gmet_3301 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2142 | (PF02550) (PF13336) | ||||
| 269799.Gmet_0684 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2265 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2261 | (PF08442) (PF00549) | ||||
| 269799.Gmet_2262 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2054 | (PF02550) (PF13336) | ||||
| 269799.Gmet_2901 | (PF05140) | (ER) | |||
| 269799.Gmet_3044 | (PF02550) (PF13336) | ||||
| 269799.Gmet_2066 | (PF01012) (PF00766) | ||||
| 269799.Gmet_0729 | (PF08442) (PF00549) | ||||
| 269799.Gmet_3294 | (PF02550) (PF13336) | ||||
| 269799.Gmet_2257 | (PF01012) (PF00766) | ||||
| 269799.Gmet_1730 | (PF02550) (PF13336) | ||||
| 269799.Gmet_2734 | (PF04055) | (mitochondrial) | |||
| 269799.Gmet_2069 | (PF08442) (PF00549) | ||||
| 269799.Gmet_1701 | (PF02310) (PF04055) | ||||
| 269799.Gmet_1705 | (PF02310) (PF04055) | ||||
| 269799.Gmet_0101 | (PF02310) (PF04055) | ||||
| 269799.Gmet_1714 | (PF02754) | (ER) | |||
| 269799.Gmet_1712 | (PF01012) (PF00766) | ||||
| 269799.Gmet_0597 | (PF02310) (PF04055) | ||||
| 269799.Gmet_2995 | (PF12838) | plastid | |||
| 269799.Gmet_2971 | (PF02310) (PF04055) | ||||
| 269799.Gmet_1982 | PF00025 | (mitochondrial) | |||
| 269799.Gmet_1690 | (PF02310) (PF04055) | ||||
| 269799.Gmet_3163 | (PF16199) (PF04055) | ||||
| 269799.Gmet_2416 | (PF02310) (PF04055) | ||||
| 269799.Gmet_3350 | (PF10531) | (plastid) | |||
| 269799.Gmet_2316 | (PF16199) (PF04055) | ||||
| 269799.Gmet_1851 | (PF01469) | (plastid) | |||
| 269799.Gmet_1526 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2152 | (PF01012) (PF00766) | ||||
| 269799.Gmet_2936 | (PF16199) (PF04055) | ||||
| 269799.Gmet_0045 | (PF02371) | ||||
| 269799.Gmet_0780 | (PF01739) | ||||
| 269799.Gmet_0549 | (PF02310) | ||||
| 269799.Gmet_0301 | (PF04055) | ||||
| 269799.Gmet_0163 | (PF12838) | ||||
| 269799.Gmet_3419 | (PF12838) | ||||
| 269799.Gmet_3417 | PF00025 | ||||
| 269799.Gmet_3300 | (PF01012) | ||||
| 269799.Gmet_3527 | PF01610 | ||||
| 269799.Gmet_1310 | PF01610 | ||||
| 269799.Gmet_1315 | (PF01609) | ||||
| 269799.Gmet_1793 | (PF08357) | ||||
| 269799.Gmet_0681 | (PF04055) | ||||
| 269799.Gmet_0683 | (PF01012) | ||||
| 269799.Gmet_0132 | (PF02371) | ||||
| 269799.Gmet_2079 | (PF12838) | ||||
| 269799.Gmet_3319 | (PF01058) | ||||
| 269799.Gmet_3083 | (PF02915) | ||||
| 269799.Gmet_3535 | (PF04055) | ||||
| 269799.Gmet_2266 | (PF01012) | ||||
| 269799.Gmet_2260 | (PF00549) | ||||
| 269799.Gmet_2263 | (PF01012) | ||||
| 269799.Gmet_2664 | (PF04055) | ||||
| 269799.Gmet_0015 | (PF04055) | ||||
| 269799.Gmet_2464 | (PF04055) | ||||
| 269799.Gmet_3051 | (PF13455) | ||||
| 269799.Gmet_0566 | (PF04055) | ||||
| 269799.Gmet_1811 | (PF12838) | ||||
| 269799.Gmet_1582 | (PF04055) | ||||
| 269799.Gmet_3321 | (PF12838) | ||||
| 269799.Gmet_3183 | (PF01609) | ||||
| 269799.Gmet_0761 | (PF12838) | ||||
| 269799.Gmet_1807 | (PF04055) | ||||
| 269799.Gmet_1574 | (PF02310) | ||||
| 269799.Gmet_1570 | (PF12838) | ||||
| 269799.Gmet_2975 | (PF02371) | ||||
| 269799.Gmet_1977 | PF01610 | ||||
| 269799.Gmet_1110 | (PF10531) | ||||
| 269799.Gmet_3332 | (PF01058) | ||||
| 269799.Gmet_2068 | (PF00549) | ||||
| 269799.Gmet_2067 | (PF01012) | ||||
| 269799.Gmet_2118 | (PF12838) | ||||
| 269799.Gmet_3425 | (PF02754) | ||||
| 269799.Gmet_3426 | (PF12838) | ||||
| 269799.Gmet_3429 | (PF02371) | ||||
| 269799.Gmet_3191 | (PF04055) | ||||
| 269799.Gmet_2641 | (PF01739) | ||||
| 269799.Gmet_2488 | (PF01609) | ||||
| 269799.Gmet_2240 | (PF01609) | ||||
| 269799.Gmet_1345 | (PF10531) | ||||
| 269799.Gmet_0723 | (PF02371) | ||||
| 269799.Gmet_2103 | (PF06792) | ||||
| 269799.Gmet_2073 | (PF02371) | ||||
| 269799.Gmet_2810 | (PF02371) | ||||
| 269799.Gmet_2258 | (PF01012) | ||||
| 269799.Gmet_3212 | (PF01739) | ||||
| 269799.Gmet_3283 | (PF01609) | ||||
| 269799.Gmet_0667 | (PF02915) | ||||
| 269799.Gmet_0668 | (PF02915) | ||||
| 269799.Gmet_3447 | (PF01609) | ||||
| 269799.Gmet_2395 | (PF12838) | ||||
| 269799.Gmet_1722 | (PF02310) | ||||
| 269799.Gmet_0418 | (PF04055) | ||||
| 269799.Gmet_1928 | (PF02915) | ||||
| 269799.Gmet_0423 | (PF04055) | ||||
| 269799.Gmet_0094 | (PF02371) | ||||
| 269799.Gmet_1658 | (PF04055) | ||||
| 269799.Gmet_3271 | (PF01739) | ||||
| 269799.Gmet_0670 | (PF02371) | ||||
| 269799.Gmet_0672 | (PF12838) | ||||
| 269799.Gmet_0874 | (PF04055) | ||||
| 269799.Gmet_2823 | (PF04055) | ||||
| 269799.Gmet_3475 | PF00025 | ||||
| 269799.Gmet_2386 | (PF01609) | ||||
| 269799.Gmet_0730 | (PF00549) | ||||
| 269799.Gmet_0283 | (PF01609) | ||||
| 269799.Gmet_3267 | (PF01739) | ||||
| 269799.Gmet_0609 | (PF04055) | ||||
| 269799.Gmet_3396 | PF01610 | ||||
| 269799.Gmet_3391 | (PF04055) | ||||
| 269799.Gmet_3390 | (PF04055) | ||||
| 269799.Gmet_2730 | (PF04055) | ||||
| 269799.Gmet_1006 | (PF04055) | ||||
| 269799.Gmet_2284 | PF01610 | ||||
| 269799.Gmet_2515 | PF01610 | ||||
| 269799.Gmet_1095 | (PF02915) | ||||
| 269799.Gmet_1077 | (PF01739) | ||||
| 269799.Gmet_3102 | PF01610 | ||||
| 269799.Gmet_3039 | (PF01609) | ||||
| 269799.Gmet_2291 | (PF02915) | ||||
| 269799.Gmet_2296 | (PF04055) | ||||
| 269799.Gmet_2507 | (PF01609) | ||||
| 269799.Gmet_1718 | (PF02371) | ||||
| 269799.Gmet_1246 | (PF04055) | ||||
| 269799.Gmet_1713 | (PF01012) | ||||
| 269799.Gmet_0443 | PF01610 | ||||
| 269799.Gmet_0046 | (PF02371) | ||||
| 269799.Gmet_3246 | (PF02754) | ||||
| 269799.Gmet_3022 | (PF13237) | ||||
| 269799.Gmet_2376 | PF01610 | ||||
| 269799.Gmet_2751 | (PF02310) | ||||
| 269799.Gmet_1185 | PF01610 | ||||
| 269799.Gmet_3349 | (PF13237) | ||||
| 269799.Gmet_3238 | (PF02915) | ||||
| 269799.Gmet_0124 | (PF04055) | ||||
| 269799.Gmet_2565 | (PF02371) | ||||
| 269799.Gmet_2685 | (PF04055) | ||||
| 269799.Gmet_2665 | PF00014 | ||||
| 269799.Gmet_1683 | (PF01609) | ||||
| 269799.Gmet_1687 | (PF04055) | ||||
| 269799.Gmet_0488 | (PF02371) | ||||
| 269799.Gmet_0337 | (PF04055) | ||||
| 269799.Gmet_0800 | PF01610 | ||||
| 269799.Gmet_3354 | (PF01058) | ||||
| 269799.Gmet_0157 | (PF10531) | ||||
| 269799.Gmet_0153 | (PF01058) | ||||
| 269799.Gmet_2883 | (PF01609) | ||||
| 269799.Gmet_2084 | (PF12838) | ||||
| 269799.Gmet_2085 | (PF02754) | ||||
| 269799.Gmet_2080 | (PF10531) | ||||
| 269799.Gmet_2794 | (PF02371) | ||||
| 269799.Gmet_2420 | (PF01739) | ||||
| 269799.Gmet_1525 | (PF01012) | ||||
| 269799.Gmet_1143 | (PF02371) | ||||
| 269799.Gmet_0323 | PF01610 | ||||
| 269799.Gmet_2166 | PF01610 | ||||
| 269799.Gmet_2095 | (PF04055) | ||||
| 269799.Gmet_2093 | (PF01609) | ||||
| 269799.Gmet_2091 | (PF01609) | ||||
| 269799.Gmet_2305 | (PF01739) | ||||
| 269799.Gmet_1069 | (PF01609) | ||||
| 269799.Gmet_3141 | (PF01609) | ||||
| 269799.Gmet_3145 | (PF02915) | ||||
| 269799.Gmet_1444 | (PF10531) | ||||
| 269799.Gmet_1541 | (PF04055) | ||||
| 269799.Gmet_1840 | (PF04055) | ||||
| 269799.Gmet_0310 | (PF02754) | ||||
| 269799.Gmet_3205 | (PF04055) | ||||
| 269799.Gmet_0958 | (PF02371) | ||||
| 269799.Gmet_2153 | (PF01012) | ||||
| 269799.Gmet_3150 | (PF04055) | ||||
| 269799.Gmet_2208 | (PF02310) | ||||
| 269799.Gmet_2840 | PF01610 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.5 (4/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (4/8 KEGG proteins)
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